Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   ACMVYO_RS07790 Genome accession   NZ_CP180296
Coordinates   1557206..1558567 (+) Length   453 a.a.
NCBI ID   WP_340177497.1    Uniprot ID   -
Organism   Staphylococcus hominis strain YSMAS1_1_D4     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1552206..1563567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMVYO_RS07765 (ACMVYO_07765) - 1552784..1554709 (-) 1926 WP_000790094.1 heavy metal translocating P-type ATPase -
  ACMVYO_RS07770 (ACMVYO_07770) - 1555039..1555365 (-) 327 WP_000391495.1 ArsR/SmtB family transcription factor -
  ACMVYO_RS07775 (ACMVYO_07775) - 1555572..1555931 (+) 360 WP_001631039.1 hypothetical protein -
  ACMVYO_RS07780 (ACMVYO_07780) - 1556043..1556381 (-) 339 Protein_1497 recombinase family protein -
  ACMVYO_RS07785 (ACMVYO_07785) - 1556390..1557019 (+) 630 Protein_1498 hypothetical protein -
  ACMVYO_RS07790 (ACMVYO_07790) ccrA 1557206..1558567 (+) 1362 WP_340177497.1 cassette chromosome recombinase CcrA Machinery gene
  ACMVYO_RS07795 (ACMVYO_07795) ccrB 1558564..1560189 (+) 1626 WP_415400575.1 cassette chromosome recombinase CcrB Machinery gene
  ACMVYO_RS07800 (ACMVYO_07800) - 1560316..1560843 (+) 528 WP_070519312.1 hypothetical protein -
  ACMVYO_RS07805 (ACMVYO_07805) - 1560858..1561430 (+) 573 WP_070519314.1 hypothetical protein -
  ACMVYO_RS07810 (ACMVYO_07810) - 1561427..1561936 (+) 510 WP_070811194.1 hypothetical protein -
  ACMVYO_RS07815 (ACMVYO_07815) - 1561988..1562605 (+) 618 WP_070519316.1 hypothetical protein -
  ACMVYO_RS07820 (ACMVYO_07820) - 1563147..1563497 (+) 351 WP_340177495.1 SAUGI family uracil-DNA glycosylase inhibitor -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 53171.17 Da        Isoelectric Point: 9.8203

>NTDB_id=1095127 ACMVYO_RS07790 WP_340177497.1 1557206..1558567(+) (ccrA) [Staphylococcus hominis strain YSMAS1_1_D4]
MEEVIAYVRQSTLKQQSLATQKSLILNTAKQYGWSNVTFYDDKKTGRHTKRSGYQRMVEMITSGKCKVLCCYRLNRLHRN
LKNAIQLFEICKTHHITIISVNDGYFNLAKEFDCFRLNILMSLAEIESNNISEQIRNGIREKAKQGKLITTHAPFGYRYR
QSHFIVHEEEAHTVKVVYRWYLQGLGYKKISQHLDNNPNLIPRKPYQVRNILLNPNYCGRVINKYGTFNDLVPSIVDIDT
FEQAQQRRLNKHHKQHISENKLKKLLKCPYCQSTLTNLTIKKEHHSLRYYVCPKNMNEAYHTCPFKGINAQMIETEVLNT
CKAYCNNQSFHDKLNETILKALKRQQMKHRQSHLTQEQLIEKLAQNQIDIETFKHLSAGSESEERYSNYSHKQITKTIRH
IIKDKLTLETIAPFIDCINITQTKQLQGIYFKNSPLNIVEQSHLITPERNEVI

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1095127 ACMVYO_RS07790 WP_340177497.1 1557206..1558567(+) (ccrA) [Staphylococcus hominis strain YSMAS1_1_D4]
ATGGAAGAAGTTATTGCTTATGTACGTCAAAGTACACTCAAACAACAAAGCTTAGCGACTCAGAAATCTCTCATTTTGAA
TACTGCTAAGCAATATGGATGGTCTAATGTGACGTTTTATGATGATAAGAAAACAGGTCGACATACAAAACGTTCAGGTT
ATCAAAGGATGGTAGAAATGATTACGTCTGGAAAATGTAAAGTATTGTGTTGCTATCGCCTAAATCGGCTCCATCGTAAT
TTGAAAAATGCCATACAACTCTTTGAAATTTGTAAAACGCATCATATCACGATCATCAGTGTTAACGATGGCTATTTTAA
CTTAGCTAAAGAGTTTGATTGTTTTCGCTTGAACATACTTATGAGTCTAGCGGAAATAGAATCTAACAACATCAGCGAAC
AAATACGAAATGGGATAAGAGAAAAAGCCAAACAAGGCAAGCTAATCACAACTCATGCTCCGTTTGGCTATCGTTATAGA
CAAAGTCATTTTATTGTACATGAAGAAGAAGCCCATACAGTCAAAGTGGTTTATCGCTGGTACTTACAAGGTCTAGGCTA
CAAAAAAATTTCCCAACATTTAGATAACAATCCTAACCTTATTCCACGTAAGCCCTATCAAGTTCGAAATATTCTCTTGA
ACCCTAACTATTGTGGTCGTGTCATCAATAAGTATGGAACATTTAATGATTTAGTCCCTTCTATTGTCGATATTGATACC
TTTGAACAAGCACAGCAACGTCGCTTGAATAAACATCATAAACAACACATTTCTGAAAACAAATTAAAGAAGCTACTTAA
ATGTCCTTACTGTCAATCAACATTAACAAACTTAACAATAAAAAAAGAACATCATTCTCTACGTTACTATGTCTGTCCTA
AAAATATGAATGAAGCTTATCATACGTGTCCATTTAAAGGTATCAATGCGCAAATGATTGAAACAGAGGTCCTCAACACT
TGTAAAGCATATTGTAACAATCAGTCATTTCATGACAAATTAAATGAGACAATACTAAAAGCTCTAAAACGCCAACAAAT
GAAACACAGACAATCACATCTAACACAAGAACAACTCATCGAAAAGCTAGCACAAAATCAAATTGATATCGAGACGTTTA
AACATTTATCTGCTGGCTCTGAAAGTGAAGAACGTTACTCTAATTATTCACATAAACAAATTACCAAAACAATCCGTCAT
ATAATCAAAGATAAATTGACATTAGAAACCATAGCACCTTTTATCGATTGCATCAACATAACTCAAACTAAACAATTACA
AGGAATCTACTTTAAAAATAGTCCACTCAATATCGTTGAACAATCACATTTAATAACTCCTGAAAGGAATGAAGTAATAT
GA

Domains

Predicted by InterProScan.

Resolvase, N terminal domain (Resolvase)

(4-147)

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(262-321)

Recombinase (Recombinase)

(168-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus COL

55.079

97.792

0.539
  ccrA Staphylococcus aureus N315

53.273

97.792

0.521

Multiple sequence alignment