Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   ACMVYO_RS03675 Genome accession   NZ_CP180296
Coordinates   732295..733011 (+) Length   238 a.a.
NCBI ID   WP_002455088.1    Uniprot ID   -
Organism   Staphylococcus hominis strain YSMAS1_1_D4     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 727295..738011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMVYO_RS03650 (ACMVYO_03650) - 728011..728634 (+) 624 WP_061815724.1 nitroreductase family protein -
  ACMVYO_RS03655 (ACMVYO_03655) - 728765..729550 (+) 786 WP_049413906.1 carbon-nitrogen family hydrolase -
  ACMVYO_RS03660 (ACMVYO_03660) - 730251..730817 (+) 567 WP_049434603.1 accessory gene regulator AgrB -
  ACMVYO_RS03665 (ACMVYO_03665) agrD 730820..730960 (+) 141 WP_049413902.1 cyclic lactone autoinducer peptide AgrD -
  ACMVYO_RS03670 (ACMVYO_03670) agrC 730993..732282 (+) 1290 WP_415401261.1 quorum-sensing sensor histidine kinase AgrC -
  ACMVYO_RS03675 (ACMVYO_03675) agrA 732295..733011 (+) 717 WP_002455088.1 quorum-sensing response regulator AgrA Regulator
  ACMVYO_RS03680 (ACMVYO_03680) - 733062..734021 (-) 960 WP_048678788.1 carbohydrate kinase family protein -
  ACMVYO_RS03685 (ACMVYO_03685) - 734022..735509 (-) 1488 WP_017175281.1 sucrose-6-phosphate hydrolase -
  ACMVYO_RS03690 (ACMVYO_03690) - 735765..737009 (-) 1245 WP_019835521.1 ammonium transporter -
  ACMVYO_RS03695 (ACMVYO_03695) - 737119..737343 (-) 225 WP_002448268.1 sulfurtransferase TusA family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27858.75 Da        Isoelectric Point: 5.2104

>NTDB_id=1095120 ACMVYO_RS03675 WP_002455088.1 732295..733011(+) (agrA) [Staphylococcus hominis strain YSMAS1_1_D4]
MKIFICEDDVKQRENMVSIINNYIMIEEKPMEIALATDDPYEIIEQSKEMNDVGCYFLDIQLEADINGIKLGSEIRKYDP
IGNIIFVTSHSELTYLTFVYKVSAMDFIFKDDPNQLKTRIIDCIETAHTRLKLLSKESNVETIELKRGSNSIYVQYDDVM
FFESSTKSHRLIAHLDNRQIEFYGNLKELAQLDDRFFRCHNSFVVNRHNIDSVDSKERIVTFRNGEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=1095120 ACMVYO_RS03675 WP_002455088.1 732295..733011(+) (agrA) [Staphylococcus hominis strain YSMAS1_1_D4]
ATGAAAATATTCATTTGTGAAGACGATGTGAAACAACGTGAAAATATGGTTTCAATTATTAATAACTATATAATGATTGA
AGAAAAACCGATGGAAATAGCGTTAGCGACAGATGATCCTTATGAAATTATTGAACAGTCAAAAGAAATGAATGATGTTG
GATGTTATTTTTTAGATATACAATTAGAAGCTGATATTAACGGTATTAAACTTGGAAGTGAAATTCGAAAGTATGATCCT
ATTGGGAATATCATCTTTGTTACAAGTCATAGTGAACTCACTTACCTAACATTTGTCTATAAGGTATCTGCAATGGATTT
TATTTTTAAAGATGATCCTAATCAACTTAAAACGCGAATAATAGATTGTATTGAAACTGCTCATACACGTTTAAAATTAC
TTTCAAAAGAAAGTAATGTTGAGACAATTGAATTAAAGCGTGGTAGCAATTCAATATATGTACAATATGATGATGTCATG
TTCTTTGAATCGTCTACAAAATCCCATCGTTTAATTGCGCATCTTGATAACCGTCAGATTGAATTCTACGGAAATCTTAA
AGAATTAGCACAACTCGATGATCGTTTTTTCAGATGTCACAATAGTTTTGTTGTAAATCGCCATAATATCGATTCAGTCG
ATTCTAAAGAACGAATTGTAACTTTCAGAAATGGTGAGCATTGCTATGCCTCTGTACGTAATGTTAAAAAGATATAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

87.395

100

0.874

Multiple sequence alignment