Detailed information NTG1095009

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: ACKX2A_RS08365
• Genome accession: NZ_CP180265
• Coordinates: 1901260..1902612 (+)
• Length: 450 a.a.
• NCBI ID: WP_415328913.1
• Uniprot ID: -
• Organism: Chryseobacterium sp. MMS23-Vi53
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1896260..1907612

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACKX2A_RS08350 (ACKX2A_08350)	yidC	1896489..1898285 (-)	1797	WP_415328910.1	membrane protein insertase YidC	-
ACKX2A_RS08355 (ACKX2A_08355)	-	1898523..1900130 (-)	1608	WP_415328911.1	CTP synthase	-
ACKX2A_RS08360 (ACKX2A_08360)	-	1900454..1901023 (-)	570	WP_415328912.1	YceI family protein	-
ACKX2A_RS08365 (ACKX2A_08365)	radA	1901260..1902612 (+)	1353	WP_415328913.1	DNA repair protein RadA	Machinery gene
ACKX2A_RS08370 (ACKX2A_08370)	-	1902718..1903311 (+)	594	WP_415328914.1	ACP phosphodiesterase	-
ACKX2A_RS08375 (ACKX2A_08375)	-	1903424..1904815 (-)	1392	WP_415328915.1	hypothetical protein	-
ACKX2A_RS08380 (ACKX2A_08380)	-	1905118..1906422 (-)	1305	WP_415328916.1	hypothetical protein	-

Sequence

Protein

• Length: 450 a.a.
• Molecular weight: 50072.62 Da
• Isoelectric Point: 6.6946

>NTDB_id=1095009 ACKX2A_RS08365 WP_415328913.1 1901260..1902612(+) (radA) [Chryseobacterium sp. MMS23-Vi53]
MAKLKTAYFCQNCGTQYSQWMGQCKNCGQWNTLVEEVVEKNTSHKTPPFSKTKQHVINIVEVETNEEPRIKTPSEELNRV
LGGGIVLGSVTLIGGEPGIGKSTLLLQLALKMKKKVFYVSGEESASQIKMRADRLTDIQNPNCFLFTETNLEKILHEAKK
LEPDFVIIDSIQTLQSQLIESSPGTVSQIRECSNEIIKYAKENNVPVFLVGHITKDGQIAGPKVLEHMVDVVLNFDGDRN
HLFRLLRANKNRFGSTSEIGIYEMISQGLKEIRNPSEILITKKFEELSGNSVAVTLEGNRPMLLEIQALVSTAVYGTPQR
SSTGFDAKRLNMLLAVLEKRAGFQLGAKDVFLNITGGIKTDDPALDLAVVASILSSNEDIAISEHYCFAGEIGLSGEIRP
IAQAEQRITEAEKLGYEKIFISNLNKLPKKKFGIKIEEVSKIEDFHERLF

Nucleotide

• Length: 1353 bp

>NTDB_id=1095009 ACKX2A_RS08365 WP_415328913.1 1901260..1902612(+) (radA) [Chryseobacterium sp. MMS23-Vi53]
ATGGCAAAATTAAAAACAGCATATTTCTGTCAAAACTGCGGAACACAATACTCCCAATGGATGGGACAGTGCAAAAACTG
CGGACAATGGAATACTTTGGTGGAAGAGGTTGTGGAAAAAAACACTTCACATAAAACACCGCCTTTTTCAAAAACAAAAC
AACACGTAATAAATATCGTTGAAGTTGAAACCAACGAAGAACCAAGAATCAAAACACCCTCCGAAGAGCTGAACCGGGTT
TTGGGAGGTGGAATTGTCTTAGGATCTGTCACGTTGATCGGTGGAGAACCTGGAATCGGAAAGTCGACCCTGCTTCTTCA
ACTTGCCCTGAAAATGAAGAAAAAAGTTTTCTATGTTTCAGGAGAAGAAAGCGCGTCTCAGATTAAAATGAGAGCCGATC
GATTAACGGATATTCAAAACCCGAATTGTTTTCTTTTTACAGAAACCAACTTGGAAAAAATTCTTCATGAAGCCAAAAAA
CTAGAGCCAGATTTTGTCATTATTGATTCCATTCAGACTTTACAATCTCAGTTGATTGAAAGTTCTCCCGGAACGGTTTC
CCAAATCCGAGAATGCTCGAATGAAATCATTAAATACGCCAAAGAAAACAACGTTCCCGTCTTTTTAGTAGGTCACATCA
CGAAAGACGGACAAATTGCAGGACCAAAAGTTTTGGAACATATGGTAGATGTCGTTTTGAATTTTGATGGCGACAGGAAT
CACCTTTTCAGATTATTAAGAGCCAACAAAAACCGTTTCGGATCGACTTCCGAGATTGGAATTTATGAAATGATTTCTCA
AGGTTTAAAAGAAATCAGAAATCCGTCGGAAATTTTAATTACAAAAAAATTCGAAGAACTTTCCGGAAATTCGGTAGCTG
TAACTTTGGAAGGAAACCGACCGATGTTGCTGGAAATTCAGGCATTAGTAAGTACCGCAGTTTACGGAACTCCACAAAGA
AGCTCCACCGGTTTTGATGCTAAAAGACTGAATATGCTTCTTGCCGTTTTAGAGAAAAGGGCAGGTTTCCAATTAGGTGC
AAAAGACGTTTTCTTAAACATCACCGGAGGTATAAAAACCGACGATCCGGCTTTGGATTTGGCGGTTGTGGCTTCCATTC
TTTCATCGAATGAAGACATTGCGATTTCCGAGCATTACTGTTTTGCAGGAGAAATTGGTTTGAGTGGCGAAATTCGTCCT
ATTGCACAGGCAGAACAGCGAATAACTGAAGCCGAAAAATTAGGTTATGAGAAAATTTTTATTTCTAATTTGAATAAACT
TCCAAAGAAAAAATTCGGAATTAAAATAGAGGAAGTAAGTAAAATCGAAGATTTTCATGAAAGGCTTTTTTAA

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (68-218)

• Subunit ChlI of Mg-chelatase (ChlI) (339-423)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	49.336	100	0.496
radA	Streptococcus mitis NCTC 12261	48.026	100	0.487
radA	Streptococcus pneumoniae D39	47.807	100	0.484
radA	Streptococcus pneumoniae TIGR4	47.807	100	0.484
radA	Streptococcus pneumoniae R6	47.807	100	0.484
radA	Streptococcus pneumoniae Rx1	47.807	100	0.484
radA	Streptococcus mitis SK321	49.882	94	0.469