Detailed information NTG1095006

Bioinformatically predicted

Overview

• Name: comF
• Type: Machinery gene
• Locus tag: ACKX2A_RS07620
• Genome accession: NZ_CP180265
• Coordinates: 1709427..1710080 (+)
• Length: 217 a.a.
• NCBI ID: WP_415328780.1
• Uniprot ID: -
• Organism: Chryseobacterium sp. MMS23-Vi53
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1704427..1715080

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACKX2A_RS07605 (ACKX2A_07605)	aceA	1704672..1705952 (-)	1281	WP_415328777.1	isocitrate lyase	-
ACKX2A_RS07610 (ACKX2A_07610)	aceB	1706083..1707657 (-)	1575	WP_415328778.1	malate synthase A	-
ACKX2A_RS07615 (ACKX2A_07615)	-	1707784..1709256 (+)	1473	WP_415328779.1	helix-turn-helix domain-containing protein	-
ACKX2A_RS07620 (ACKX2A_07620)	comF	1709427..1710080 (+)	654	WP_415328780.1	ComF family protein	Machinery gene
ACKX2A_RS07625 (ACKX2A_07625)	-	1710182..1710868 (+)	687	WP_415328781.1	alpha/beta fold hydrolase	-
ACKX2A_RS07630 (ACKX2A_07630)	upp	1710984..1711637 (-)	654	WP_415328782.1	uracil phosphoribosyltransferase	-
ACKX2A_RS07635 (ACKX2A_07635)	der	1711850..1713160 (-)	1311	WP_415328783.1	ribosome biogenesis GTPase Der	-
ACKX2A_RS07645 (ACKX2A_07645)	-	1714059..1714202 (+)	144	WP_415328784.1	hypothetical protein	-

Sequence

Protein

• Length: 217 a.a.
• Molecular weight: 25247.32 Da
• Isoelectric Point: 8.3569

>NTDB_id=1095006 ACKX2A_RS07620 WP_415328780.1 1709427..1710080(+) (comF) [Chryseobacterium sp. MMS23-Vi53]
MILDLLFPNRCLNCNQIIDGNLIVCNLCFKQIHFTHDHYFDDSFIKEKCKLLFPIENTFALMQFSKENLSRKIIHTLKYK
NREKVGKVIAEWTAERLNFQEAKPDLLVTVPLHPKKLKERGYNQLHLFAETLSEFYTIPFDHDLIKRNHYSKAQALKDKQ
HRLETENTFSITKNISGKHILLIDDVFTTGNTLASIAWEILKSGDNKVSVLVMAVDV

Nucleotide

• Length: 654 bp

>NTDB_id=1095006 ACKX2A_RS07620 WP_415328780.1 1709427..1710080(+) (comF) [Chryseobacterium sp. MMS23-Vi53]
ATGATTTTAGACTTACTTTTCCCGAATCGTTGCCTTAACTGCAACCAGATTATTGATGGCAACCTGATTGTCTGTAATCT
CTGTTTTAAACAAATTCATTTTACACACGACCATTATTTTGATGACAGTTTCATTAAAGAAAAATGCAAATTGTTGTTTC
CAATTGAAAATACTTTTGCATTGATGCAGTTTTCTAAGGAAAATTTAAGCCGGAAAATCATCCATACATTAAAATATAAA
AACAGAGAAAAAGTTGGGAAAGTTATTGCCGAATGGACAGCAGAAAGGCTGAATTTTCAGGAAGCAAAACCAGATTTGCT
TGTAACTGTTCCGCTACATCCGAAAAAATTAAAGGAAAGAGGTTATAATCAGTTGCATTTATTCGCTGAAACCTTGTCGG
AATTTTATACAATTCCTTTTGATCATGATTTAATAAAAAGAAATCATTATTCTAAAGCTCAGGCTTTGAAAGATAAGCAA
CATCGTCTGGAAACCGAAAACACGTTTTCTATTACCAAAAATATTTCAGGAAAACATATTCTTTTGATTGATGATGTTTT
TACAACCGGAAATACACTCGCCTCGATCGCATGGGAAATTTTGAAATCAGGAGACAATAAAGTGAGCGTTCTTGTAATGG
CGGTTGACGTATAG

Domains

Predicted by InterproScan.

• Phosphoribosyl transferase domain (Pribosyltran) (78-203)

• Double zinc ribbon domain (DZR_2) (2-37)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comF	Riemerella anatipestifer ATCC 11845 = DSM 15868	51.389	99.539	0.512