Detailed information    

insolico Bioinformatically predicted

Overview


Name   spo0A   Type   Regulator
Locus tag   ACLCDX_RS11355 Genome accession   NZ_CP180263
Coordinates   2248002..2248805 (-) Length   267 a.a.
NCBI ID   WP_024422935.1    Uniprot ID   A0AAX0Z9Q1
Organism   Bacillus safensis strain BS22LVI     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context


Location: 2243002..2253805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLCDX_RS11335 (ACLCDX_11335) - 2245206..2245442 (+) 237 WP_024422931.1 DUF2627 domain-containing protein -
  ACLCDX_RS11340 (ACLCDX_11340) - 2245479..2246216 (-) 738 WP_024422932.1 glycerophosphodiester phosphodiesterase -
  ACLCDX_RS11345 (ACLCDX_11345) - 2246446..2247546 (-) 1101 WP_024422933.1 Rap family tetratricopeptide repeat protein -
  ACLCDX_RS11350 (ACLCDX_11350) - 2247534..2247731 (-) 198 WP_024422934.1 hypothetical protein -
  ACLCDX_RS11355 (ACLCDX_11355) spo0A 2248002..2248805 (-) 804 WP_024422935.1 sporulation transcription factor Spo0A Regulator
  ACLCDX_RS11360 (ACLCDX_11360) spoIVB 2249090..2250367 (-) 1278 WP_025092993.1 SpoIVB peptidase -
  ACLCDX_RS11365 (ACLCDX_11365) recN 2250568..2252301 (-) 1734 WP_025092992.1 DNA repair protein RecN Machinery gene
  ACLCDX_RS11370 (ACLCDX_11370) ahrC 2252335..2252784 (-) 450 WP_024422938.1 transcriptional regulator AhrC/ArgR -

Sequence


Protein


Download         Length: 267 a.a.        Molecular weight: 29932.46 Da        Isoelectric Point: 6.3918

>NTDB_id=1094973 ACLCDX_RS11355 WP_024422935.1 2248002..2248805(-) (spo0A) [Bacillus safensis strain BS22LVI]
MEKIKVCVADDNRELVGLLTEYIEGQEDMEVLGVAYNGQECLTLFKDKEPDVLLLDIIMPHLDGLAVLERLRENNEMTKQ
PSVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNGTQVTHRSSSIQNSVLRNKPEPKRKNLDASITTI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMSKAKPTNSEFIAMVADRLRLEHRAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=1094973 ACLCDX_RS11355 WP_024422935.1 2248002..2248805(-) (spo0A) [Bacillus safensis strain BS22LVI]
GTGGAGAAAATTAAAGTGTGTGTAGCTGATGACAATCGAGAGCTTGTTGGCCTTTTGACAGAGTATATTGAGGGACAGGA
AGATATGGAAGTACTTGGCGTGGCGTATAATGGTCAGGAATGCCTGACATTATTTAAAGATAAAGAGCCCGACGTTCTCC
TCTTAGACATTATTATGCCTCATTTAGACGGTCTTGCTGTACTAGAACGCCTCCGTGAAAACAATGAAATGACAAAACAG
CCAAGTGTGATTATGCTAACGGCATTTGGACAAGAAGATGTCACGAAAAAAGCAGTTGATTTAGGCGCATCCTATTTCAT
TTTAAAGCCATTTGATATGGAAAACCTAGTAGGTCATATTCGTCAAGTCAGTGGAAACGGCACACAAGTTACCCATCGCT
CTTCATCAATCCAAAACAGTGTTCTTCGTAACAAACCTGAACCGAAACGTAAAAACTTAGATGCGAGCATTACGACCATC
ATTCATGAGATTGGCGTGCCCGCTCATATTAAAGGCTATTTATACTTAAGAGAAGCCATTTCTATGGTGTACAATGACAT
TGAGCTTCTCGGAAGCATCACTAAAGTGTTGTACCCAGACATTGCAAAGAAATTTAACACGACTGCCAGCAGGGTAGAAC
GAGCGATTCGTCATGCCATTGAAGTCGCTTGGAGCAGAGGAAACATTGATTCCATTTCCTCACTCTTTGGTTATACTGTC
AGCATGTCAAAAGCGAAACCAACCAATTCAGAATTTATTGCCATGGTAGCTGATCGTTTGCGTTTAGAGCATAGAGCAAG
CTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

88.06

100

0.884


Multiple sequence alignment