Detailed information    

insolico Bioinformatically predicted

Overview


Name   spo0A   Type   Regulator
Locus tag   ACLBKY_RS11180 Genome accession   NZ_CP180233
Coordinates   2190735..2191538 (-) Length   267 a.a.
NCBI ID   WP_081114343.1    Uniprot ID   -
Organism   Bacillus altitudinis strain Ba 5     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context


Location: 2185735..2196538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLBKY_RS11165 (ACLBKY_11165) - 2187951..2188187 (+) 237 WP_008342229.1 DUF2627 domain-containing protein -
  ACLBKY_RS11170 (ACLBKY_11170) - 2188221..2188958 (-) 738 WP_008342228.1 glycerophosphodiester phosphodiesterase -
  ACLBKY_RS11175 (ACLBKY_11175) - 2189185..2190285 (-) 1101 WP_007501159.1 Rap family tetratricopeptide repeat protein -
  ACLBKY_RS11180 (ACLBKY_11180) spo0A 2190735..2191538 (-) 804 WP_081114343.1 sporulation transcription factor Spo0A Regulator
  ACLBKY_RS11185 (ACLBKY_11185) spoIVB 2191822..2193099 (-) 1278 WP_025207604.1 SpoIVB peptidase -
  ACLBKY_RS11190 (ACLBKY_11190) recN 2193298..2195031 (-) 1734 WP_008342224.1 DNA repair protein RecN Machinery gene
  ACLBKY_RS11195 (ACLBKY_11195) ahrC 2195066..2195515 (-) 450 WP_007501163.1 transcriptional regulator AhrC/ArgR -

Sequence


Protein


Download         Length: 267 a.a.        Molecular weight: 29895.40 Da        Isoelectric Point: 6.3918

>NTDB_id=1094742 ACLBKY_RS11180 WP_081114343.1 2190735..2191538(-) (spo0A) [Bacillus altitudinis strain Ba 5]
MEKIKVCVADDNRELVGLLTEYIEGQEDMEVLGVAYNGQECLTLFKDKEPDVLLLDIIMPHLDGLAVLERLRENNEMTKQ
PSVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNGTQVSHRSSSIQNSVLRSKTEPKRKNLDASITTI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMSKAKPTNSEFIAMVADRLRLEHRAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=1094742 ACLBKY_RS11180 WP_081114343.1 2190735..2191538(-) (spo0A) [Bacillus altitudinis strain Ba 5]
GTGGAGAAAATTAAAGTGTGTGTAGCTGATGACAATCGAGAACTTGTTGGCCTTTTGACAGAGTATATTGAGGGACAGGA
AGATATGGAAGTACTTGGCGTGGCGTATAATGGTCAGGAATGTCTGACATTATTTAAAGATAAAGAGCCCGACGTTCTCC
TCTTAGATATTATCATGCCTCATTTAGACGGTCTTGCTGTACTGGAACGCCTCCGTGAAAACAATGAAATGACCAAACAG
CCAAGTGTCATTATGCTGACGGCTTTCGGACAAGAAGACGTAACGAAAAAAGCGGTCGATTTGGGCGCATCCTATTTCAT
TTTGAAACCATTCGATATGGAAAACCTCGTAGGTCATATTCGTCAAGTCAGTGGAAACGGCACACAAGTCAGCCATCGAT
CTTCATCTATCCAAAACAGTGTCCTTCGCAGCAAAACTGAACCGAAACGTAAGAACTTAGATGCGAGCATTACGACAATT
ATTCATGAGATTGGCGTGCCAGCTCATATTAAAGGCTATTTATACTTAAGAGAAGCCATTTCGATGGTGTACAATGATAT
TGAACTACTCGGCAGTATTACAAAAGTATTGTACCCAGACATTGCAAAGAAATTTAACACGACAGCCAGCAGGGTAGAAC
GAGCGATTCGTCATGCCATTGAAGTGGCTTGGAGCAGAGGGAATATTGACTCCATTTCCTCACTCTTTGGTTACACAGTC
AGCATGTCAAAAGCCAAACCAACCAATTCAGAATTTATTGCGATGGTGGCTGATCGTCTGCGTTTAGAGCATAGAGCAAG
CTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

88.433

100

0.888


Multiple sequence alignment