Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   ACLBKY_RS10235 Genome accession   NZ_CP180233
Coordinates   2019118..2019753 (+) Length   211 a.a.
NCBI ID   WP_017359733.1    Uniprot ID   A0A653S7S4
Organism   Bacillus altitudinis strain Ba 5     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2014118..2024753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLBKY_RS10195 (ACLBKY_10195) - 2014282..2015400 (+) 1119 WP_025207530.1 NADH-dependent flavin oxidoreductase -
  ACLBKY_RS10200 (ACLBKY_10200) - 2015450..2015956 (-) 507 WP_065460619.1 PTS glucose transporter subunit IIA -
  ACLBKY_RS10205 (ACLBKY_10205) - 2016125..2016544 (+) 420 WP_073414769.1 Hsp20/alpha crystallin family protein -
  ACLBKY_RS10210 (ACLBKY_10210) - 2016566..2017018 (-) 453 WP_414834830.1 YppG family protein -
  ACLBKY_RS10215 (ACLBKY_10215) - 2017127..2017507 (-) 381 WP_350389939.1 YppE family protein -
  ACLBKY_RS10220 (ACLBKY_10220) - 2017557..2017790 (-) 234 WP_234717153.1 DUF5446 family protein -
  ACLBKY_RS10225 (ACLBKY_10225) sspM 2017987..2018091 (+) 105 WP_017359731.1 acid-soluble spore protein SspM -
  ACLBKY_RS10230 (ACLBKY_10230) - 2018115..2019071 (-) 957 WP_035391684.1 DUF2515 domain-containing protein -
  ACLBKY_RS10235 (ACLBKY_10235) recU 2019118..2019753 (+) 636 WP_017359733.1 Holliday junction resolvase RecU Machinery gene
  ACLBKY_RS10240 (ACLBKY_10240) - 2019773..2022460 (+) 2688 WP_025207532.1 PBP1A family penicillin-binding protein -
  ACLBKY_RS10245 (ACLBKY_10245) - 2022496..2023005 (-) 510 WP_414834831.1 YpoC family protein -
  ACLBKY_RS10250 (ACLBKY_10250) nth 2023002..2023664 (-) 663 WP_008344602.1 endonuclease III -
  ACLBKY_RS10255 (ACLBKY_10255) - 2023682..2024386 (-) 705 WP_007500879.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24314.60 Da        Isoelectric Point: 9.6582

>NTDB_id=1094741 ACLBKY_RS10235 WP_017359733.1 2019118..2019753(+) (recU) [Bacillus altitudinis strain Ba 5]
MIRYPNGKSYQPIQQIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLSATDLFFFWERQQ
QNGRKSISKDELMEAGHLMTLGYSPRIDYIKVVETLHFSDDSKQHLRSKKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1094741 ACLBKY_RS10235 WP_017359733.1 2019118..2019753(+) (recU) [Bacillus altitudinis strain Ba 5]
ATGATTCGGTATCCTAACGGAAAATCGTATCAGCCCATTCAACAAATTGGGACAAAAAAAAGAATCAGCGGCGAATCATC
TTATAGTAACCGCGGGATGACGCTTGAAGCTGACTTAAATGAAACGAACCAGTACTATTTGGTCAACGGGATTGCAGTCA
TTCATAAAAAGCCTACCCCTGTTCAAATTGTCAATGTGGATTATCCAAAAAGAAGCGCTGCTGTCATTAAAGAAGCCTAT
TTTAAACAATCCTCCACAACAGACTACAACGGGGTATACAAAGGGCGCTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACCACCTCGTTTCCGCTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTTGTTATTATATCCGCATTTGGTTCCGTTTATTATTTGTCCGCTACTGACCTCTTCTTCTTTTGGGAGCGGCAGCAG
CAAAACGGCCGTAAATCCATTAGCAAAGATGAATTAATGGAAGCAGGTCACCTCATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGACAGCAAGCAACATTTACGTTCGAAAAAGGTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A653S7S4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

72.772

95.735

0.697

Multiple sequence alignment