Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpC   Type   Regulator
Locus tag   ACLBKY_RS06625 Genome accession   NZ_CP180233
Coordinates   1295905..1298010 (-) Length   701 a.a.
NCBI ID   WP_254505793.1    Uniprot ID   -
Organism   Bacillus altitudinis strain Ba 5     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1290905..1303010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLBKY_RS06600 (ACLBKY_06600) - 1291148..1291390 (+) 243 WP_008346101.1 aspartyl-phosphate phosphatase Spo0E family protein -
  ACLBKY_RS06605 (ACLBKY_06605) - 1291443..1292942 (-) 1500 WP_254505794.1 ATP-binding protein -
  ACLBKY_RS06610 (ACLBKY_06610) - 1293147..1293602 (+) 456 WP_003211701.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACLBKY_RS06615 (ACLBKY_06615) motB 1293789..1294556 (-) 768 WP_019743067.1 flagellar motor protein MotB -
  ACLBKY_RS06620 (ACLBKY_06620) motA 1294549..1295343 (-) 795 WP_008346088.1 flagellar motor stator protein MotA -
  ACLBKY_RS06625 (ACLBKY_06625) clpC 1295905..1298010 (-) 2106 WP_254505793.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  ACLBKY_RS06630 (ACLBKY_06630) - 1298256..1299299 (+) 1044 WP_048003074.1 membrane protein -
  ACLBKY_RS06635 (ACLBKY_06635) queC 1299574..1300230 (+) 657 WP_025207244.1 7-cyano-7-deazaguanine synthase QueC -
  ACLBKY_RS06640 (ACLBKY_06640) queD 1300231..1300671 (+) 441 WP_008348088.1 6-carboxytetrahydropterin synthase QueD -
  ACLBKY_RS06645 (ACLBKY_06645) queE 1300664..1301395 (+) 732 WP_058213825.1 7-carboxy-7-deazaguanine synthase QueE -
  ACLBKY_RS06650 (ACLBKY_06650) queF 1301411..1301908 (+) 498 WP_003211403.1 preQ(1) synthase -
  ACLBKY_RS06655 (ACLBKY_06655) - 1302167..1302385 (+) 219 WP_025207245.1 hypothetical protein -
  ACLBKY_RS06660 (ACLBKY_06660) - 1302510..1302698 (-) 189 WP_003211747.1 YkvS family protein -

Sequence

Protein


Download         Length: 701 a.a.        Molecular weight: 78222.86 Da        Isoelectric Point: 5.1807

>NTDB_id=1094732 ACLBKY_RS06625 WP_254505793.1 1295905..1298010(-) (clpC) [Bacillus altitudinis strain Ba 5]
MRCQHCQVNEATIRLNMQVNSSRSQMVLCEDCYTSLMEQSKMKMGPNLFGGGSFFSEQAGHATSQERPKQKGLLDELGRN
LTDGAHAGLIDPVIGRDEEVTRVIEILNRRNKNNPVLIGEPGVGKTAIAEGLALKIANGDVPNKLKNKQVYLLDVSSLVA
NTGIRGQFEERMKQLIKELQSRKNIILFVDEIHLLVGAGSAEGSMDAGNILKPALARGELQLVGATTLKEYRQIEKDAAL
ERRFQPVIVDEPTQDEAFEILKGIQDKYEAYHGVTYSDEAIKACVQLSSRYIQDRHLPDKAIDLMDEAGSKANLSIDAAS
EDELTNRLAQIAAEKQAALNEERYEKAAKLRDEEEAIEARLQNKTNDKEHVVTAEDIQSIVEQKTGIPVGKLQADEQTKM
KEIDVRLKARVIGQEHAVEKVAKAVKRSRAGLKSKHRPTGSFLFVGPTGVGKTELSKTLAEELFGSKEAIIRLDMSEYME
KHSVSKIIGSPPGYVGHDEAGQLTEKVRRKPYSIILLDEIEKAHPDVQHMFLQIMEDGRLTDSQGRTVSFKDTVIIMTSN
AGSTDKKAVKVGFQSEQEEAIEEQSMIDSLSAYFKPEFLNRFDSIIQFDSLDKDDLVKIVDLLLKDLSEQLKEQNLTVHI
TNEAKEKIAELGYHPAFGARPLRRTIQEHVEDQMTDILLEEEQLTGFTVDVEHDEIVVKKS

Nucleotide


Download         Length: 2106 bp        

>NTDB_id=1094732 ACLBKY_RS06625 WP_254505793.1 1295905..1298010(-) (clpC) [Bacillus altitudinis strain Ba 5]
ATGCGTTGTCAACATTGTCAAGTAAATGAAGCAACTATTCGCCTGAATATGCAAGTAAATTCGTCCCGTAGCCAAATGGT
TTTATGTGAAGACTGCTATACCTCTTTGATGGAACAGTCAAAAATGAAAATGGGTCCTAACCTTTTCGGAGGCGGTTCAT
TCTTCTCTGAGCAAGCAGGACATGCGACGAGCCAAGAGCGGCCTAAACAAAAAGGCTTACTCGATGAGCTTGGCCGGAAC
TTAACGGATGGCGCACATGCTGGTTTAATCGATCCTGTCATTGGCCGTGATGAAGAAGTCACAAGAGTCATTGAGATTTT
AAATAGAAGAAATAAAAACAATCCTGTCCTCATTGGTGAACCTGGTGTTGGTAAAACGGCCATAGCCGAAGGACTAGCAC
TAAAAATTGCAAATGGAGATGTACCAAATAAATTAAAGAACAAACAAGTTTATTTATTAGATGTCTCTTCACTTGTGGCA
AACACAGGTATACGTGGTCAATTTGAGGAACGGATGAAGCAATTAATCAAAGAATTGCAAAGCCGTAAAAATATCATCTT
ATTCGTTGATGAAATTCATCTTCTTGTAGGCGCAGGTTCTGCCGAAGGGTCAATGGATGCCGGAAACATTTTGAAACCAG
CTCTAGCTCGAGGGGAACTGCAGCTAGTAGGTGCGACAACATTAAAGGAATATCGTCAGATTGAAAAAGATGCTGCCCTT
GAACGCAGATTCCAGCCCGTCATCGTTGATGAGCCAACACAGGATGAAGCATTCGAGATATTAAAAGGCATTCAAGATAA
GTATGAAGCGTATCATGGCGTCACCTATTCTGACGAAGCCATTAAAGCGTGTGTTCAATTATCTTCGCGGTATATTCAAG
ACCGCCACTTGCCGGATAAAGCCATTGATTTAATGGATGAAGCAGGTTCAAAAGCGAATCTCTCCATTGATGCAGCAAGT
GAAGATGAATTAACAAACCGTCTTGCGCAAATCGCCGCTGAAAAACAAGCTGCTTTAAATGAAGAACGATATGAAAAAGC
AGCGAAGCTTCGAGACGAAGAAGAAGCGATTGAAGCGAGATTGCAAAACAAAACAAATGACAAAGAACATGTCGTCACAG
CTGAGGACATTCAGTCGATTGTAGAACAAAAAACAGGTATCCCTGTTGGCAAACTGCAAGCAGACGAACAAACAAAAATG
AAAGAAATTGATGTCCGCTTAAAAGCCCGCGTCATTGGTCAGGAACATGCGGTTGAAAAAGTGGCGAAAGCCGTAAAAAG
AAGCAGAGCCGGCTTAAAATCAAAACACAGACCAACTGGCTCCTTCCTTTTCGTTGGGCCAACAGGCGTCGGGAAAACCG
AATTGTCTAAAACATTAGCGGAAGAATTATTTGGCTCAAAAGAAGCGATCATTCGTTTAGATATGAGTGAGTACATGGAG
AAACACTCCGTGTCCAAAATCATCGGTTCTCCTCCTGGTTACGTTGGACATGATGAAGCCGGACAGCTCACGGAAAAGGT
TCGCAGAAAACCATACAGCATCATTTTGCTCGATGAAATCGAAAAAGCGCACCCTGATGTCCAGCATATGTTCCTTCAAA
TCATGGAAGATGGTCGTCTAACAGACAGCCAAGGCAGAACCGTCAGCTTTAAAGACACAGTCATCATTATGACAAGTAAC
GCTGGCAGCACAGATAAAAAAGCAGTCAAAGTCGGATTCCAGTCTGAACAAGAAGAAGCCATCGAAGAACAATCAATGAT
TGATTCACTGAGCGCATATTTCAAACCGGAATTCTTGAACCGTTTTGACAGCATCATTCAGTTTGATTCATTAGATAAAG
ACGATTTAGTCAAAATTGTGGATCTTCTGCTCAAAGATTTGTCAGAGCAGTTAAAAGAACAAAATCTAACTGTTCACATC
ACAAACGAAGCGAAAGAAAAAATCGCTGAACTTGGTTATCATCCAGCATTTGGGGCTCGTCCGTTACGAAGAACGATTCA
AGAGCATGTTGAGGATCAAATGACGGACATCTTGCTTGAAGAAGAACAACTTACTGGATTTACAGTCGATGTTGAACATG
ACGAAATTGTTGTGAAAAAGAGCTAA

Domains

Predicted by InterproScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(611-686)

AAA domain (Cdc48 subfamily) (AAA_2)

(437-605)

ATPase family associated with various cellular activities (AAA) (AAA)

(116-248)

AAA lid domain (AAA_lid_9)

(253-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Lactococcus lactis subsp. cremoris KW2

56.969

100

0.601
  clpE Streptococcus mutans UA159

56.51

100

0.601
  clpE Streptococcus pneumoniae Rx1

55.846

100

0.579
  clpE Streptococcus pneumoniae D39

55.846

100

0.579
  clpE Streptococcus pneumoniae R6

55.846

100

0.579
  clpE Streptococcus pneumoniae TIGR4

55.846

100

0.579
  clpC Bacillus subtilis subsp. subtilis str. 168

53.8

95.72

0.515
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

46.855

90.728

0.425
  clpC Streptococcus thermophilus LMD-9

44.582

92.154

0.411
  clpC Streptococcus thermophilus LMG 18311

44.427

92.154

0.409
  clpC Streptococcus pneumoniae TIGR4

44.637

90.442

0.404
  clpC Streptococcus pneumoniae Rx1

44.833

89.729

0.402
  clpC Streptococcus pneumoniae D39

44.833

89.729

0.402
  clpC Streptococcus mutans UA159

44.127

89.872

0.397

Multiple sequence alignment