Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   ACLBKW_RS02040 Genome accession   NZ_CP180232
Coordinates   385996..386424 (-) Length   142 a.a.
NCBI ID   WP_007498233.1    Uniprot ID   A0AAU7FLT6
Organism   Bacillus altitudinis strain Ba     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 380996..391424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLBKW_RS02010 (ACLBKW_02010) - 381141..381470 (+) 330 WP_017366586.1 YckD family protein -
  ACLBKW_RS02015 (ACLBKW_02015) - 381517..382281 (-) 765 WP_414834599.1 MBL fold metallo-hydrolase -
  ACLBKW_RS02020 (ACLBKW_02020) - 382397..382816 (+) 420 WP_026050043.1 Lrp/AsnC family transcriptional regulator -
  ACLBKW_RS02025 (ACLBKW_02025) - 382841..383647 (+) 807 WP_414834600.1 aminoglycoside N(3)-acetyltransferase -
  ACLBKW_RS02030 (ACLBKW_02030) comJ 383649..384035 (-) 387 WP_414834601.1 competence protein ComJ -
  ACLBKW_RS02035 (ACLBKW_02035) - 384172..385869 (-) 1698 WP_414834602.1 methyl-accepting chemotaxis protein -
  ACLBKW_RS02040 (ACLBKW_02040) nucA/comI 385996..386424 (-) 429 WP_007498233.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  ACLBKW_RS02045 (ACLBKW_02045) - 386791..388860 (+) 2070 WP_414834603.1 hydantoinase/oxoprolinase family protein -
  ACLBKW_RS02050 (ACLBKW_02050) - 388850..390835 (+) 1986 WP_414834604.1 hydantoinase B/oxoprolinase family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15926.90 Da        Isoelectric Point: 6.4881

>NTDB_id=1094654 ACLBKW_RS02040 WP_007498233.1 385996..386424(-) (nucA/comI) [Bacillus altitudinis strain Ba]
MKLLKTILLLLLIVIGIATGYVQLGQHKQETTNSSYDKTIHFPSDRYPETAKHIEEAIDEGHSSICTIDRKNSDEQRDKS
LHGIPTKRGYDRDEWPMAMCKEGGAGASVKYVRPSDNRGAGSWVSHQLSDDPDGTRIQFIIE

Nucleotide


Download         Length: 429 bp        

>NTDB_id=1094654 ACLBKW_RS02040 WP_007498233.1 385996..386424(-) (nucA/comI) [Bacillus altitudinis strain Ba]
ATGAAACTTCTTAAAACCATTCTCTTGCTTTTATTGATTGTCATTGGTATAGCGACAGGCTATGTCCAACTAGGGCAACA
TAAACAAGAGACGACAAACTCTTCTTATGACAAAACCATTCACTTTCCATCAGATCGATATCCAGAAACCGCGAAGCACA
TAGAAGAAGCTATTGACGAAGGTCATTCTTCCATTTGCACCATTGATCGAAAAAATAGTGATGAGCAAAGAGACAAATCA
CTTCATGGCATTCCAACAAAGCGTGGTTATGATCGTGATGAATGGCCAATGGCCATGTGTAAAGAAGGTGGAGCAGGGGC
TTCTGTCAAATATGTACGTCCTTCGGATAATAGGGGGGCAGGCTCTTGGGTAAGTCATCAATTATCAGATGATCCTGATG
GCACAAGAATCCAATTTATTATCGAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(46-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

68.224

75.352

0.514

Multiple sequence alignment