Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACMHYH_RS10660 Genome accession   NZ_CP180212
Coordinates   2227010..2228386 (-) Length   458 a.a.
NCBI ID   WP_414839361.1    Uniprot ID   -
Organism   Carnobacterium sp. TMP28 isolate 11T.7.20.2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2222010..2233386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMHYH_RS10635 (ACMHYH_10635) epsC 2222308..2222823 (-) 516 WP_414839358.1 serine O-acetyltransferase EpsC -
  ACMHYH_RS10640 (ACMHYH_10640) gltX 2223126..2224595 (-) 1470 WP_414839359.1 glutamate--tRNA ligase -
  ACMHYH_RS10645 (ACMHYH_10645) ispF 2224612..2225094 (-) 483 WP_414840392.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  ACMHYH_RS10650 (ACMHYH_10650) ispD 2225104..2225808 (-) 705 Protein_2030 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  ACMHYH_RS10655 (ACMHYH_10655) - 2225819..2226934 (-) 1116 WP_414839360.1 PIN/TRAM domain-containing protein -
  ACMHYH_RS10660 (ACMHYH_10660) radA 2227010..2228386 (-) 1377 WP_414839361.1 DNA repair protein RadA Machinery gene
  ACMHYH_RS10665 (ACMHYH_10665) - 2228636..2229169 (-) 534 WP_414839362.1 dUTP diphosphatase -
  ACMHYH_RS10670 (ACMHYH_10670) - 2229460..2230563 (+) 1104 WP_414839363.1 ABC transporter ATP-binding protein -
  ACMHYH_RS10675 (ACMHYH_10675) - 2230681..2231220 (-) 540 Protein_2035 sugar O-acetyltransferase -
  ACMHYH_RS10680 (ACMHYH_10680) - 2231576..2232022 (+) 447 WP_414839364.1 DUF4385 domain-containing protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49915.57 Da        Isoelectric Point: 9.0539

>NTDB_id=1094617 ACMHYH_RS10660 WP_414839361.1 2227010..2228386(-) (radA) [Carnobacterium sp. TMP28 isolate 11T.7.20.2]
MAKKISTKFVCQACGYESPKWMGRCPNCSAWNQMEEEVIADKNNRRSRVSMTGKSAKAQTIQEITVSKIPRVKTKLAELN
RVLGGGVVPGSLILIGGDPGIGKSTLLLQVSAQLNDTGGKVLYVSGEESASQLKMSANRLGVKGDNFYIYPETDMAAIRQ
TIEEIKPDFVVIDSIQTMSQPDVSSVVGSVSQVRESTADLMKIAKTNNIAIFIVGHVTKEGSIAGPKMLEHMVDTVLYFE
GDRHHTFRILRAVKNRFGSTNEIGIFEMRNGGLVEVLNPSEMFLEERLAGATGSAVVAAMEGTRPILAEIQSLITPTVFG
NAKRTVSGLDHNRVSLIMAVLEKRAGMLLQNQDAYLKAAGGVKLDEPAIDLAIAMSITSSYQEKETRPKDCFIGEIGLTG
EVRRVSRIDQRVQEAAKLGFTRIFIPKNNIGGWTFPKDIEVVGVSTITDSIRKAFDTK

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=1094617 ACMHYH_RS10660 WP_414839361.1 2227010..2228386(-) (radA) [Carnobacterium sp. TMP28 isolate 11T.7.20.2]
GTGGCAAAAAAAATATCAACTAAATTTGTCTGCCAAGCTTGTGGATACGAATCTCCTAAATGGATGGGACGTTGTCCAAA
CTGTAGTGCATGGAATCAAATGGAAGAAGAAGTAATTGCAGATAAGAATAATCGTAGAAGTCGTGTTAGTATGACTGGAA
AGTCTGCTAAGGCTCAAACGATTCAAGAAATTACAGTTTCAAAAATACCAAGAGTAAAAACGAAATTAGCTGAATTAAAT
CGTGTTCTAGGCGGTGGAGTTGTTCCGGGCTCTTTAATTCTGATTGGAGGAGATCCAGGAATTGGTAAATCAACTCTCTT
ATTACAAGTTTCTGCTCAGTTAAATGACACCGGTGGCAAGGTGCTATATGTATCAGGTGAAGAAAGTGCAAGTCAACTTA
AGATGAGTGCCAATCGATTAGGCGTTAAAGGAGATAATTTTTATATTTATCCTGAAACAGATATGGCTGCTATTCGTCAA
ACAATTGAAGAAATAAAACCAGACTTTGTTGTCATTGACTCAATCCAAACAATGAGTCAGCCAGATGTTTCGAGTGTTGT
TGGAAGTGTGAGTCAAGTACGAGAAAGTACAGCAGATTTAATGAAAATAGCGAAGACGAATAACATTGCTATTTTTATTG
TTGGACATGTAACTAAGGAAGGGTCTATTGCAGGGCCTAAAATGTTAGAACATATGGTGGATACGGTTCTTTATTTTGAA
GGAGATCGACACCACACGTTTCGTATTTTAAGAGCTGTTAAAAACCGTTTTGGCTCAACGAATGAAATTGGGATTTTTGA
AATGAGAAATGGTGGTCTGGTAGAAGTCCTAAACCCTTCTGAGATGTTCCTTGAAGAACGCCTAGCTGGAGCAACAGGAT
CAGCTGTAGTGGCTGCAATGGAAGGCACAAGGCCTATTCTAGCAGAGATTCAATCACTGATTACACCGACTGTTTTTGGA
AATGCTAAACGGACGGTAAGTGGTTTAGATCATAATCGAGTATCACTAATTATGGCTGTTTTAGAAAAAAGAGCCGGTAT
GTTGCTACAAAATCAAGATGCCTACTTAAAAGCAGCTGGTGGAGTGAAATTAGATGAGCCTGCTATCGATTTAGCGATTG
CGATGAGTATTACATCTAGTTATCAAGAAAAAGAAACACGTCCAAAAGACTGCTTTATCGGTGAAATAGGACTTACAGGA
GAGGTAAGAAGAGTTAGTCGGATTGATCAACGAGTTCAAGAAGCTGCAAAATTAGGTTTCACTCGTATTTTTATTCCTAA
AAATAATATTGGTGGATGGACATTTCCTAAAGATATTGAAGTCGTAGGAGTATCAACCATTACAGATAGTATTCGAAAAG
CTTTTGATACTAAATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(68-221)

Subunit ChlI of Mg-chelatase (ChlI)

(363-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

69.011

99.345

0.686
  radA Streptococcus pneumoniae D39

69.011

99.345

0.686
  radA Streptococcus pneumoniae R6

69.011

99.345

0.686
  radA Streptococcus pneumoniae TIGR4

69.011

99.345

0.686
  radA Streptococcus mitis NCTC 12261

69.011

99.345

0.686
  radA Streptococcus mitis SK321

68.791

99.345

0.683
  radA Bacillus subtilis subsp. subtilis str. 168

67.401

99.127

0.668

Multiple sequence alignment