Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ACMHYH_RS03325 Genome accession   NZ_CP180212
Coordinates   690522..692339 (+) Length   605 a.a.
NCBI ID   WP_414839953.1    Uniprot ID   -
Organism   Carnobacterium sp. TMP28 isolate 11T.7.20.2     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 685522..697339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMHYH_RS03300 (ACMHYH_03300) - 685578..686672 (+) 1095 WP_414839948.1 ABC transporter ATP-binding protein -
  ACMHYH_RS03305 (ACMHYH_03305) - 686674..687615 (+) 942 WP_414839949.1 ABC transporter ATP-binding protein -
  ACMHYH_RS03310 (ACMHYH_03310) spxA 687898..688296 (+) 399 WP_414839950.1 transcriptional regulator SpxA -
  ACMHYH_RS03315 (ACMHYH_03315) - 688500..689165 (+) 666 WP_414839951.1 adaptor protein MecA -
  ACMHYH_RS03320 (ACMHYH_03320) - 689293..690474 (+) 1182 WP_414839952.1 competence protein CoiA -
  ACMHYH_RS03325 (ACMHYH_03325) pepF 690522..692339 (+) 1818 WP_414839953.1 oligoendopeptidase F Regulator
  ACMHYH_RS03330 (ACMHYH_03330) - 692440..693108 (-) 669 WP_414839954.1 DsbA family protein -
  ACMHYH_RS03335 (ACMHYH_03335) - 693265..693858 (-) 594 WP_414839955.1 CYTH domain-containing protein -
  ACMHYH_RS03340 (ACMHYH_03340) - 694066..694728 (+) 663 WP_414839956.1 GTP pyrophosphokinase -
  ACMHYH_RS03345 (ACMHYH_03345) - 694767..695579 (+) 813 WP_414839957.1 NAD kinase -
  ACMHYH_RS03350 (ACMHYH_03350) - 695569..696465 (+) 897 WP_414839958.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69323.94 Da        Isoelectric Point: 5.1614

>NTDB_id=1094607 ACMHYH_RS03325 WP_414839953.1 690522..692339(+) (pepF) [Carnobacterium sp. TMP28 isolate 11T.7.20.2]
MSEFKKLPKREEVPEKLTWNLEVIFKTDEDFFISYRDLESKLTGMNSFKGKLSSSSEMLVSSIQSILEVSSQLETIYVYA
HLKNDQDTTNTIYQAMFEQASLLATKVSESISWFEPEVLGIPEETLSKFLKDNNELTTYQHFIDKLTALRKHVLSAESES
LLAGAGELFGASSRTFNILNNADIQFPTIEDKDGNTIQLSHGVYGQVMESTDRLLREVGFKALYNVYQGLNNTFASTLSS
HIKYHNYNAAVHHYGSAREAALSAGHIPEAVYDTLLSVVDENLHLLHRYVALRKKLLSVDELHMYDMYTPIMGEATIEFN
YNEAKETILKALEPLGEEYQAVLKQAFDDRWIDVVENEGKRSGAYSSGAYNTKPYILLNWHDSLNHLYTLAHELGHSVHS
YFTRKNQPYVYGDYSIFLAEIASTTNENLLTEYLLETQTKPEIRSYILNHYLDGFKGTIFRQTQFAEFEHFIHEESAKET
PLTADFLNQAYKKLNTKYYGPSVSQDPEIGYEWSRIPHFYYNYYVYQYSTGFSAATALADNILKDKSSKSLEKFLIYLKS
GSSDYPIDVMKKAGVDMTQKTYLEEAMTVFKLRLDELEKIAKSSE

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=1094607 ACMHYH_RS03325 WP_414839953.1 690522..692339(+) (pepF) [Carnobacterium sp. TMP28 isolate 11T.7.20.2]
ATGAGTGAATTTAAAAAATTACCAAAACGTGAAGAAGTACCTGAAAAATTAACATGGAACTTAGAAGTTATTTTTAAAAC
AGATGAAGATTTTTTTATTTCTTATCGAGATTTAGAAAGCAAACTAACTGGAATGAACTCATTCAAAGGAAAGCTTAGTA
GCAGCTCAGAGATGTTAGTAAGCAGTATCCAATCAATCTTAGAAGTTTCTAGTCAATTAGAAACAATTTATGTGTATGCT
CATTTGAAGAATGATCAAGATACAACTAACACTATCTACCAAGCAATGTTTGAACAAGCTTCACTTTTAGCAACAAAAGT
AAGTGAGTCTATCTCTTGGTTTGAACCAGAAGTATTAGGAATACCGGAAGAGACGTTATCAAAATTCTTAAAAGATAACA
ATGAGCTAACAACTTATCAACATTTTATCGATAAACTAACAGCTTTAAGGAAGCATGTTTTATCAGCTGAATCAGAGTCA
TTGTTAGCTGGTGCAGGTGAACTATTCGGAGCTTCAAGTCGAACATTTAATATTTTAAACAATGCTGATATTCAGTTCCC
AACGATAGAAGACAAAGACGGGAATACAATACAATTATCTCATGGTGTTTATGGGCAAGTAATGGAAAGTACAGATCGTT
TACTCCGGGAAGTAGGATTTAAAGCGCTATACAACGTTTATCAAGGACTAAACAATACATTTGCAAGCACATTGTCTTCT
CATATTAAATACCACAACTACAATGCCGCCGTCCATCATTATGGATCGGCACGTGAAGCAGCTTTATCAGCTGGCCATAT
ACCTGAGGCAGTATACGATACCTTGCTATCAGTAGTAGATGAGAATCTTCACTTGCTTCATCGTTACGTGGCACTAAGAA
AAAAACTTCTTTCTGTTGATGAGTTGCACATGTATGACATGTATACACCAATCATGGGGGAAGCTACTATTGAATTTAAT
TATAATGAAGCAAAAGAAACAATTCTAAAAGCATTAGAGCCTTTAGGTGAAGAGTATCAGGCAGTATTAAAACAAGCTTT
TGATGACCGTTGGATAGACGTTGTGGAGAATGAAGGGAAAAGAAGTGGAGCTTATTCCTCTGGAGCATATAATACAAAAC
CGTATATTTTATTAAACTGGCACGATTCGTTAAATCACCTTTATACATTAGCACATGAGTTAGGACATAGTGTTCACAGT
TATTTCACACGAAAAAATCAACCGTATGTTTATGGAGACTATTCTATATTTTTAGCAGAAATAGCTTCAACAACAAATGA
AAATCTTTTAACTGAGTATTTATTGGAAACTCAAACTAAACCAGAAATACGTTCATATATTTTAAATCATTATCTAGATG
GGTTCAAAGGAACTATATTTAGACAAACACAATTTGCTGAATTTGAGCATTTTATACATGAAGAATCTGCAAAAGAAACA
CCTTTAACGGCAGATTTTTTAAATCAAGCCTACAAAAAATTAAATACTAAGTATTATGGTCCTTCTGTTTCACAAGACCC
AGAAATTGGCTATGAATGGTCTAGAATTCCACATTTTTATTATAACTATTATGTTTATCAATATTCGACAGGTTTTTCAG
CTGCTACAGCACTTGCTGATAACATTTTAAAAGATAAATCTAGTAAATCTTTAGAAAAATTTTTGATTTATCTTAAATCA
GGAAGTAGTGATTACCCAATTGATGTCATGAAAAAAGCTGGTGTAGATATGACTCAAAAGACTTATCTAGAAGAGGCTAT
GACGGTTTTCAAATTAAGGTTAGATGAATTAGAAAAAATTGCTAAAAGTAGCGAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-588)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.759

98.017

0.498

Multiple sequence alignment