Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ACMHYH_RS02895 Genome accession   NZ_CP180212
Coordinates   586316..588031 (+) Length   571 a.a.
NCBI ID   WP_414839873.1    Uniprot ID   -
Organism   Carnobacterium sp. TMP28 isolate 11T.7.20.2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 581316..593031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMHYH_RS02865 (ACMHYH_02865) folD 581471..582325 (+) 855 WP_414839867.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -
  ACMHYH_RS02870 (ACMHYH_02870) xseA 582353..583693 (+) 1341 WP_414839868.1 exodeoxyribonuclease VII large subunit -
  ACMHYH_RS02875 (ACMHYH_02875) - 583690..583929 (+) 240 WP_414839869.1 exodeoxyribonuclease VII small subunit -
  ACMHYH_RS02880 (ACMHYH_02880) - 583944..584855 (+) 912 WP_414839870.1 polyprenyl synthetase family protein -
  ACMHYH_RS02885 (ACMHYH_02885) - 584857..585669 (+) 813 WP_414839871.1 TlyA family RNA methyltransferase -
  ACMHYH_RS02890 (ACMHYH_02890) argR 585831..586280 (+) 450 WP_414839872.1 arginine repressor -
  ACMHYH_RS02895 (ACMHYH_02895) recN 586316..588031 (+) 1716 WP_414839873.1 DNA repair protein RecN Machinery gene
  ACMHYH_RS02900 (ACMHYH_02900) - 588072..588203 (-) 132 WP_414839874.1 DUF4044 domain-containing protein -
  ACMHYH_RS02905 (ACMHYH_02905) - 588278..589234 (-) 957 WP_414839875.1 magnesium transporter CorA family protein -
  ACMHYH_RS02910 (ACMHYH_02910) gndA 589536..590969 (+) 1434 WP_414839876.1 NADP-dependent phosphogluconate dehydrogenase -
  ACMHYH_RS02915 (ACMHYH_02915) - 591183..591875 (+) 693 WP_414839877.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 571 a.a.        Molecular weight: 65059.22 Da        Isoelectric Point: 4.7824

>NTDB_id=1094599 ACMHYH_RS02895 WP_414839873.1 586316..588031(+) (recN) [Carnobacterium sp. TMP28 isolate 11T.7.20.2]
MLQELTIKNFAIIHDLSLTFETGMTVLTGETGAGKSIIIDAVGLLAGGRGSNEFIRHGESKCVLEGLFSMEGNSLTYNLL
EQYDIASENDDVIIQRDIHRNGKNVCRINGRLVNISTLRLIGETLIDIHGQNEHQELMNPEKHLAMLDQFGDESLQKMKK
NYCVTFSKYTQTKKAYRKWQNTEQEFAQRLDMLQFQANDIEMAELIDKEEDDLLEEKNLLMNYQKIINALSESYDALQGE
ENNGIDLVGQAMTGISGIEDIDHKYKQFSEVIASSYFQLQEVASDILREMDQMAYDEDRLNEIEKRLEFIYQMKRKYGVS
IEAIKNHYEKIMLEIDQLQNREDHVNNLKIEMDLFSKELIDKGEGLSQMRQVAALKLEEAIHEQFKELFMDKVVLKVQFF
EKNQEDSLSRAHETGLDRIEFYIATNPGEPLKPLVKVASGGELSRIMLAMKTIFSKTQGLTSIIFDEVDTGVSGRVAQAI
ANKIYLVAIHSQVLCITHLPQVAAMANHHLFISKTIIDERTETHVTALVENEKVDEVARMLAGTEITKLTIEHAKELINL
AEIQKDKSINK

Nucleotide


Download         Length: 1716 bp        

>NTDB_id=1094599 ACMHYH_RS02895 WP_414839873.1 586316..588031(+) (recN) [Carnobacterium sp. TMP28 isolate 11T.7.20.2]
GTGTTACAAGAATTAACCATTAAAAACTTTGCTATTATTCATGATTTGAGTTTAACTTTTGAAACAGGAATGACCGTTTT
AACAGGTGAAACAGGTGCAGGAAAATCGATTATCATTGATGCTGTAGGATTATTAGCTGGAGGGCGTGGATCGAATGAAT
TTATTCGACACGGTGAAAGTAAATGCGTTTTAGAGGGGCTTTTTTCAATGGAAGGCAACTCGCTGACGTATAACTTATTG
GAGCAATACGATATCGCAAGTGAGAATGATGATGTCATCATCCAACGAGATATTCATCGTAATGGTAAGAATGTTTGTCG
GATTAATGGAAGGTTAGTTAATATTTCGACATTAAGATTAATTGGTGAAACACTCATTGATATTCATGGACAAAATGAAC
ACCAAGAATTGATGAATCCAGAAAAACATCTAGCAATGTTGGATCAATTTGGTGATGAATCGCTACAGAAAATGAAAAAA
AATTATTGTGTAACGTTTTCTAAGTATACGCAAACTAAAAAGGCTTATCGCAAATGGCAAAACACAGAGCAGGAGTTTGC
CCAAAGGCTTGATATGCTGCAATTTCAAGCAAATGATATTGAAATGGCTGAATTAATAGATAAAGAAGAAGATGACTTAT
TGGAAGAAAAAAACCTATTAATGAATTATCAAAAAATTATAAATGCTCTATCAGAAAGTTACGATGCCTTGCAAGGTGAA
GAAAATAACGGAATTGATTTAGTGGGGCAGGCAATGACAGGAATAAGTGGTATTGAAGATATTGATCATAAATATAAACA
ATTCTCAGAGGTTATCGCAAGTAGTTATTTCCAACTGCAAGAAGTTGCGAGTGATATCTTACGTGAGATGGACCAGATGG
CTTATGACGAAGATAGGTTAAATGAAATTGAAAAAAGATTAGAATTTATTTATCAGATGAAAAGAAAATATGGAGTATCT
ATTGAAGCCATTAAAAATCATTATGAAAAAATTATGTTAGAGATTGATCAACTTCAAAATCGCGAAGATCATGTCAATAA
TCTAAAAATAGAAATGGATCTGTTCTCAAAAGAATTAATTGATAAAGGTGAAGGTTTGTCTCAAATGAGACAAGTAGCAG
CTTTAAAGTTAGAAGAGGCTATTCATGAACAGTTTAAAGAATTATTTATGGATAAAGTGGTATTAAAGGTACAGTTTTTT
GAAAAAAATCAAGAAGATAGTTTAAGTAGAGCTCATGAAACGGGACTTGATCGGATTGAATTTTATATCGCAACGAATCC
TGGTGAGCCACTCAAACCCTTGGTTAAAGTAGCTTCTGGTGGGGAACTATCCAGAATAATGTTAGCGATGAAAACTATTT
TTTCAAAAACTCAAGGATTAACAAGTATTATTTTTGACGAAGTAGATACTGGTGTCAGCGGGAGAGTTGCCCAAGCGATT
GCGAATAAAATATACTTGGTTGCGATACATTCACAGGTTTTGTGTATTACGCATTTGCCTCAAGTAGCAGCTATGGCTAA
TCATCATTTATTTATTTCTAAAACAATTATCGATGAGCGGACAGAAACACACGTCACGGCTTTAGTTGAAAATGAAAAAG
TCGATGAAGTTGCTCGTATGCTCGCAGGGACAGAAATAACGAAGCTAACGATTGAGCATGCTAAAGAATTAATAAATTTA
GCGGAAATCCAGAAAGATAAAAGTATAAATAAATAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-512)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.511

100

0.485

Multiple sequence alignment