Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   ACMVO4_RS14280 Genome accession   NZ_CP180205
Coordinates   3099478..3100485 (-) Length   335 a.a.
NCBI ID   WP_272281911.1    Uniprot ID   -
Organism   Vibrio europaeus strain EX1     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3094478..3105485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMVO4_RS14260 (ACMVO4_14260) - 3094623..3096221 (-) 1599 WP_171383605.1 BCCT family transporter -
  ACMVO4_RS14265 (ACMVO4_14265) hslU 3096499..3097833 (-) 1335 WP_069667307.1 HslU--HslV peptidase ATPase subunit -
  ACMVO4_RS14270 (ACMVO4_14270) hslV 3097884..3098426 (-) 543 WP_272279176.1 ATP-dependent protease subunit HslV -
  ACMVO4_RS14275 (ACMVO4_14275) ftsN 3098811..3099359 (-) 549 WP_272785861.1 cell division protein FtsN -
  ACMVO4_RS14280 (ACMVO4_14280) cytR 3099478..3100485 (-) 1008 WP_272281911.1 DNA-binding transcriptional regulator CytR Regulator
  ACMVO4_RS14285 (ACMVO4_14285) priA 3100843..3103044 (-) 2202 WP_414931571.1 primosomal protein N' -
  ACMVO4_RS14290 (ACMVO4_14290) rpmE 3103328..3103546 (+) 219 WP_004743259.1 50S ribosomal protein L31 -
  ACMVO4_RS14295 (ACMVO4_14295) - 3103803..3105080 (+) 1278 WP_069667302.1 malic enzyme-like NAD(P)-binding protein -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36890.51 Da        Isoelectric Point: 6.6018

>NTDB_id=1094527 ACMVO4_RS14280 WP_272281911.1 3099478..3100485(-) (cytR) [Vibrio europaeus strain EX1]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIIAIIPDICDPYYTEIIRG
IEDAAMEHGYIVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQMGHKRIAQISGPETATLCQFRHQGYQQALRRAGIAMNPNYCATGDFTFEAGTKAIRQLLALPDAPTA
VFCHNDAMAIGVIQEAKKLGLRVPQDLSVVGFDDIHFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPRVL

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=1094527 ACMVO4_RS14280 WP_272281911.1 3099478..3100485(-) (cytR) [Vibrio europaeus strain EX1]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTTTCAACAGCGACAGTGTCTAGAGCGCTAATGAATCCAGAAAA
GGTATCGTCATCGACAAGGAAAAGAGTCGAAGATGCTGTTTTAGAAGCTGGTTATTCACCAAACTCGTTGGCGCGCAACT
TGCGTCGTAACGAATCAAAAACAATCATCGCAATCATTCCAGATATTTGTGATCCCTACTACACCGAGATCATTCGCGGA
ATTGAAGATGCGGCAATGGAGCACGGATACATCGTTTTGCTTGGCGATAGTGGGCAGCAGAAGAAGCGCGAAAGCTCATT
TGTAAACCTAGTATTTACTAAGCAAGCGGATGGCATGTTGCTGCTTGGTACCGATCTTCCTTTTGACGTCAGTAAACCTG
AACAAAAGAACTTACCTCCTATGGTAATGGCTTGTGAGTTTGCTCCTGAGTTGGAGTTACCAACGGTACACATCGACAAC
CTGACTTCTGCATTTGAAGCGGTAAACTATCTAACACAGATGGGTCATAAACGTATTGCACAAATCTCAGGCCCAGAAAC
GGCTACCTTATGTCAGTTCCGTCATCAAGGTTATCAACAAGCCCTGCGACGTGCCGGAATCGCTATGAACCCGAATTATT
GCGCTACAGGTGATTTTACCTTTGAGGCCGGAACTAAAGCGATCCGCCAGCTTTTAGCTTTGCCAGATGCTCCGACAGCA
GTGTTCTGTCACAACGATGCCATGGCAATTGGTGTGATTCAAGAAGCGAAGAAACTAGGTTTGCGTGTTCCGCAAGACCT
ATCCGTTGTAGGATTTGATGATATTCACTTTGCTCAATATTGCGATCCACCGTTAACGACCATTTCTCAGCCTCGCTATG
AAATCGGCCGCCAAGCAATGCTCATGATGCTTGAGCTGCTACGTGGACATGATGTTCGCGCAGGGTCGAGATTGCTTGAA
ACCAAGCTGGTGGTACGTGAAAGCGCTGCGCCTCCAAGAGTGCTTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

92.47

99.104

0.916
  cytR Vibrio parahaemolyticus RIMD 2210633

88.288

99.403

0.878

Multiple sequence alignment