Detailed information NTG1094498

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACMVO4_RS02425
• Genome accession: NZ_CP180205
• Coordinates: 468347..469321 (+)
• Length: 324 a.a.
• NCBI ID: WP_069667601.1
• Uniprot ID: A0A178JC81
• Organism: Vibrio europaeus strain EX1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 463347..474321

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACMVO4_RS02390 (ACMVO4_02390)	ftsB	463416..463694 (+)	279	WP_004742582.1	cell division protein FtsB	-
ACMVO4_RS02395 (ACMVO4_02395)	ispD	463695..464402 (+)	708	WP_171382766.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ACMVO4_RS02400 (ACMVO4_02400)	ispF	464406..464882 (+)	477	WP_004742584.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACMVO4_RS02405 (ACMVO4_02405)	truD	464936..465982 (+)	1047	WP_171801077.1	tRNA pseudouridine(13) synthase TruD	-
ACMVO4_RS02410 (ACMVO4_02410)	surE	465979..466737 (+)	759	WP_414931885.1	5'/3'-nucleotidase SurE	-
ACMVO4_RS02415 (ACMVO4_02415)	-	466740..467366 (+)	627	WP_171382769.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ACMVO4_RS02420 (ACMVO4_02420)	nlpD	467369..468277 (+)	909	WP_414931886.1	murein hydrolase activator NlpD	-
ACMVO4_RS02425 (ACMVO4_02425)	rpoS	468347..469321 (+)	975	WP_069667601.1	RNA polymerase sigma factor RpoS	Regulator
ACMVO4_RS02430 (ACMVO4_02430)	-	469389..470660 (-)	1272	WP_069667600.1	HlyC/CorC family transporter	-
ACMVO4_RS02435 (ACMVO4_02435)	-	470789..471583 (-)	795	WP_069667599.1	inner membrane protein YpjD	-
ACMVO4_RS02440 (ACMVO4_02440)	ffh	471792..473183 (+)	1392	WP_069667598.1	signal recognition particle protein	-
ACMVO4_RS02445 (ACMVO4_02445)	rpsP	473412..473660 (+)	249	WP_004742593.1	30S ribosomal protein S16	-
ACMVO4_RS02450 (ACMVO4_02450)	rimM	473690..474238 (+)	549	WP_069667597.1	ribosome maturation factor RimM	-

Sequence

Protein

• Length: 324 a.a.
• Molecular weight: 37137.09 Da
• Isoelectric Point: 4.7775

>NTDB_id=1094498 ACMVO4_RS02425 WP_069667601.1 468347..469321(+) (rpoS) [Vibrio europaeus strain EX1]
MSISNTATKVEEFEIGRETTETFQAVESAKPAQETKEEFDASTKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGDEA
ARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPI
HVVKELNIYLRTARELSQKLDHEPTAEEIATQLDKPVDDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDINNSDPEVS
TQDDDIKNSLIHWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILIKQGLNMENLFS
VTED

Nucleotide

• Length: 975 bp

>NTDB_id=1094498 ACMVO4_RS02425 WP_069667601.1 468347..469321(+) (rpoS) [Vibrio europaeus strain EX1]
ATGAGTATCAGCAATACAGCAACGAAAGTCGAAGAATTCGAAATCGGTCGAGAAACAACGGAAACGTTTCAAGCCGTAGA
ATCAGCAAAACCCGCACAAGAAACCAAAGAAGAGTTTGATGCATCGACCAAAAGTCTTGATGCTACCCAGCTTTACTTAG
GTGAAATTGGTTTCTCTCCACTACTTACCGCTGAAGAAGAAGTTCTGTATGCGCGTCGTGCCCTGCGAGGTGACGAAGCT
GCGCGTAAACGAATGATCGAAAGTAACCTTCGCTTAGTAGTGAAAATCTCACGTCGATACAGTAACCGTGGCCTAGCGCT
TCTTGATCTTATTGAAGAAGGAAATCTAGGATTGATCCGTGCGGTTGAGAAGTTCGACCCAGAGCGTGGTTTCAGATTCT
CCACCTACGCAACATGGTGGATTCGCCAAACCATTGAACGTGCATTAATGAATCAAACTCGCACGATTCGATTACCTATT
CACGTCGTCAAAGAGCTTAATATTTACCTGCGTACCGCTCGTGAACTTTCACAGAAACTTGACCATGAGCCTACTGCAGA
AGAGATCGCGACTCAGCTAGATAAGCCAGTTGATGATGTGAGTAAAATGCTCCGCCTTAATGAACGCATCAGCTCTGTTG
ATACGCCAATAGGTGGTGATGGTGAAAAGGCTCTGCTTGATATCATTCCAGATATTAATAACTCAGACCCTGAAGTCTCA
ACTCAAGATGACGACATCAAAAACTCTCTAATCCATTGGTTAGATGAGCTTAATCCAAAGCAAAAAGAAGTCTTAGCGCG
TCGCTTTGGCCTTCTTGGCTACGAGCCATCGACTCTTGAAGAGGTCGGTCGCGAGATTAATCTTACTCGTGAACGTGTTC
GTCAAATACAGGTAGAAGGTTTACGTCGCCTACGAGAGATATTGATCAAGCAGGGGCTAAATATGGAAAACCTATTTAGT
GTCACTGAAGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (165-238)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (47-80)

• Sigma-70 region 2 (Sigma70_r2) (85-154)

• Sigma-70, region 4 (Sigma70_r4) (253-306)

3D structure

• AlphaFold DB: A0A178JC81

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.631	100	0.867