Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ACMHDP_RS12995 Genome accession   NZ_CP180195
Coordinates   2520427..2522112 (+) Length   561 a.a.
NCBI ID   WP_414841346.1    Uniprot ID   -
Organism   Enterococcus saccharolyticus strain GXN23C125Es     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2515427..2527112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMHDP_RS12965 (ACMHDP_12965) - 2515721..2516575 (+) 855 WP_016175686.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  ACMHDP_RS12970 (ACMHDP_12970) xseA 2516577..2517926 (+) 1350 WP_414841344.1 exodeoxyribonuclease VII large subunit -
  ACMHDP_RS12975 (ACMHDP_12975) - 2517907..2518128 (+) 222 WP_016175684.1 exodeoxyribonuclease VII small subunit -
  ACMHDP_RS12980 (ACMHDP_12980) - 2518125..2519009 (+) 885 WP_414841345.1 polyprenyl synthetase family protein -
  ACMHDP_RS12985 (ACMHDP_12985) - 2519025..2519843 (+) 819 WP_016175682.1 TlyA family RNA methyltransferase -
  ACMHDP_RS12990 (ACMHDP_12990) argR 2519963..2520415 (+) 453 WP_016175681.1 arginine repressor -
  ACMHDP_RS12995 (ACMHDP_12995) recN 2520427..2522112 (+) 1686 WP_414841346.1 DNA repair protein RecN Machinery gene
  ACMHDP_RS13000 (ACMHDP_13000) - 2522170..2522286 (-) 117 WP_016175679.1 DUF4044 domain-containing protein -
  ACMHDP_RS13005 (ACMHDP_13005) - 2522496..2522864 (+) 369 WP_414841347.1 DUF3397 domain-containing protein -
  ACMHDP_RS13010 (ACMHDP_13010) mraZ 2523038..2523469 (+) 432 WP_016175677.1 division/cell wall cluster transcriptional repressor MraZ -
  ACMHDP_RS13015 (ACMHDP_13015) rsmH 2523484..2524440 (+) 957 WP_414841348.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  ACMHDP_RS13020 (ACMHDP_13020) ftsL 2524446..2524838 (+) 393 WP_016175675.1 cell division protein FtsL -
  ACMHDP_RS13025 (ACMHDP_13025) - 2524839..2527052 (+) 2214 WP_414841349.1 penicillin-binding transpeptidase domain-containing protein -

Sequence

Protein


Download         Length: 561 a.a.        Molecular weight: 63411.74 Da        Isoelectric Point: 4.4780

>NTDB_id=1094464 ACMHDP_RS12995 WP_414841346.1 2520427..2522112(+) (recN) [Enterococcus saccharolyticus strain GXN23C125Es]
MLLELTIENFAIIPKLHLSFHQGMTALTGETGAGKSIIIDAMGLLAGSRGSSDYIRQGADKCLLEGLFELPQQNGFQQVM
DELGIDCSEDVLIVQRDMSISGKSVCRVNGRTVTLANLRRIGMYLVDIQGQNEHQELLQADKHLSLMDSFGSQDFQHALA
NYQTHYHEFRQLEKQVRKIQSNEQSYVQRMDMLRFQQEEIEQAELQPDEEELLVEERDKLSNFQKIVDALAKAYGVLSSE
AGNSLDGVSIALNEMQGIAHLDNDYEQINENIQNAYYLLQDAASDISRQMDRLELDEGRLEEVVLRLEIIRQLKRKYGDS
IPTILAYYDKISEELSAATMTEGQLEELEAQLVEKQQYVWQLAEVLHVKRQEIAQQLEQEILQELSELYMENTQFDIHFE
TGKTLRDTGFDQVEFYLSTNPGEPLKPLVKVASGGELSRILLALKTIFSKTQEMTSIVFDEVDTGVSGRVAQAIAEKIAK
IADNSQVLCITHLPQVAAVADYQYFISKAVKDGRTQTHVVQLTNEERVDEVARMLAGAEITELTLEHARELLRIAGKVAH
R

Nucleotide


Download         Length: 1686 bp        

>NTDB_id=1094464 ACMHDP_RS12995 WP_414841346.1 2520427..2522112(+) (recN) [Enterococcus saccharolyticus strain GXN23C125Es]
ATGCTACTAGAGCTAACGATTGAAAATTTTGCGATTATTCCCAAACTGCATTTAAGTTTTCATCAAGGCATGACGGCATT
AACGGGTGAAACAGGTGCCGGGAAATCTATCATTATTGATGCGATGGGCTTATTAGCTGGCAGTCGTGGTTCCAGTGATT
ACATTCGCCAAGGAGCAGACAAATGTTTGTTGGAAGGATTATTTGAACTACCACAACAAAATGGTTTTCAACAAGTGATG
GATGAATTAGGCATTGATTGTTCAGAAGACGTATTAATCGTTCAACGCGACATGTCTATTTCAGGAAAAAGTGTTTGTCG
TGTGAATGGTCGGACAGTGACCTTAGCAAATTTGCGTCGTATCGGGATGTATTTAGTAGACATTCAAGGACAAAATGAAC
ACCAAGAACTCCTGCAAGCAGACAAACATTTATCATTAATGGATAGTTTTGGTTCGCAAGACTTTCAACATGCTTTAGCA
AATTATCAAACACATTATCATGAATTTCGTCAATTAGAAAAACAAGTACGTAAAATTCAATCAAATGAACAATCTTATGT
GCAACGAATGGATATGTTACGTTTTCAGCAAGAAGAAATTGAACAAGCCGAGTTACAACCGGATGAAGAAGAACTTTTAG
TTGAAGAACGTGATAAGTTAAGTAACTTCCAAAAGATTGTTGATGCACTTGCCAAAGCGTATGGCGTACTTTCTTCTGAA
GCAGGTAATAGTTTGGATGGTGTGAGCATTGCCTTAAATGAAATGCAAGGAATTGCACATTTAGACAATGATTATGAACA
GATTAACGAAAATATTCAAAATGCCTATTATTTATTACAAGATGCGGCGAGTGATATTTCTCGGCAAATGGATCGATTAG
AATTAGATGAAGGACGTTTAGAAGAAGTCGTTCTTCGTTTAGAAATCATCCGTCAATTGAAGCGAAAATATGGCGATTCA
ATTCCAACTATTTTAGCGTATTATGATAAAATTTCAGAAGAACTATCTGCCGCTACCATGACTGAAGGGCAATTAGAAGA
ATTAGAAGCACAATTAGTAGAAAAACAACAATATGTTTGGCAATTAGCAGAAGTACTACATGTCAAACGCCAAGAGATTG
CGCAACAACTGGAACAAGAAATTTTACAAGAATTATCAGAACTATATATGGAAAATACCCAGTTTGATATCCATTTTGAA
ACTGGAAAAACGTTACGTGACACTGGTTTTGATCAAGTAGAGTTTTATTTAAGTACTAATCCAGGAGAACCGCTAAAACC
ATTAGTAAAAGTGGCTTCTGGAGGAGAATTGTCTCGTATTTTATTAGCGTTAAAGACGATTTTTTCCAAAACACAAGAAA
TGACCAGTATTGTTTTCGATGAAGTCGATACAGGCGTAAGTGGTCGGGTTGCTCAAGCGATTGCTGAAAAAATTGCGAAG
ATTGCTGATAATTCACAAGTATTATGTATTACTCATTTGCCACAAGTTGCTGCAGTCGCAGATTACCAATATTTTATTTC
GAAAGCAGTCAAAGATGGGCGCACTCAAACCCATGTTGTTCAATTGACAAATGAAGAGCGTGTTGATGAAGTGGCTCGGA
TGTTAGCTGGCGCTGAAATTACGGAATTAACTTTAGAACATGCACGTGAATTGTTACGAATTGCTGGGAAAGTTGCACAT
CGATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

47.993

100

0.49

Multiple sequence alignment