Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ACMHDP_RS12290 Genome accession   NZ_CP180195
Coordinates   2387824..2389641 (+) Length   605 a.a.
NCBI ID   WP_016174352.1    Uniprot ID   -
Organism   Enterococcus saccharolyticus strain GXN23C125Es     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2382824..2394641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMHDP_RS12270 (ACMHDP_12270) - 2383075..2384790 (+) 1716 WP_414841250.1 ABC transporter ATP-binding protein -
  ACMHDP_RS12275 (ACMHDP_12275) spxA 2385402..2385800 (+) 399 WP_016174349.1 transcriptional regulator SpxA -
  ACMHDP_RS12280 (ACMHDP_12280) - 2385954..2386667 (+) 714 WP_016174350.1 adaptor protein MecA -
  ACMHDP_RS12285 (ACMHDP_12285) - 2386790..2387761 (+) 972 WP_016174351.1 competence protein CoiA -
  ACMHDP_RS12290 (ACMHDP_12290) pepF 2387824..2389641 (+) 1818 WP_016174352.1 oligoendopeptidase F Regulator
  ACMHDP_RS12295 (ACMHDP_12295) - 2389685..2390833 (-) 1149 WP_016174353.1 cation:proton antiporter -
  ACMHDP_RS12300 (ACMHDP_12300) - 2391001..2392146 (-) 1146 WP_414841251.1 cation:proton antiporter -
  ACMHDP_RS12305 (ACMHDP_12305) - 2392326..2393684 (+) 1359 WP_414841252.1 TrkH family potassium uptake protein -
  ACMHDP_RS12310 (ACMHDP_12310) - 2393721..2394362 (-) 642 WP_016175797.1 DsbA family protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 68881.05 Da        Isoelectric Point: 4.5625

>NTDB_id=1094462 ACMHDP_RS12290 WP_016174352.1 2387824..2389641(+) (pepF) [Enterococcus saccharolyticus strain GXN23C125Es]
MSETKQLPTREEVAEASTWDLTKIFVDDAAFEVAFKELQAELKQASSYKGTLNKGGAAFLAALEYVLDVSRKLETLYVYS
HLKNDQDTANTTYQALYARASSLLAQTSEAISWLEPELLTLSDETIWSYFDEEPKLEGYRHFVKQTVDNRAHVLPAEQEA
LLAAAGEIFGSPSNTFSVLNNADLVFPTIEGEDGEKIQLSHGIYGQLLESTDRRVREEAFKGLYSVYEQFRNTFASTLSA
NVKAHNYKAKVRKFASAREAALSSNHIPESVYDTLVDVVNQNLPLLHRYMELRKRLLNLDDLHMYDVYTPLLGEAPISYT
YDQAVEKAIQALEPMGEEYLTVVKEAFNNRWIDVVENKGKRSGAYSSGAYDTLPYILMNWHDTLDQLFTLVHEMGHSVHS
YFTRSNQPYVYGDYSIFLAEIASTTNENILTEHLLETETDPRVRAYVLNHYLDGFKGTVFRQTQFAEFEHFMHVEDAKGT
PLTSEFLSESYGALNKKYYGEALADDPEIRLEWSRIPHFYYNYYVFQYSTGFSAASALAGKILSEGPAALERYLNYLKAG
NSDYPIEVMKKAGVDMTQADYIEDAMKMFEQRLNELEALVEELEN

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=1094462 ACMHDP_RS12290 WP_016174352.1 2387824..2389641(+) (pepF) [Enterococcus saccharolyticus strain GXN23C125Es]
ATGTCAGAAACAAAACAATTACCAACACGTGAAGAAGTCGCAGAAGCGTCAACATGGGATTTAACGAAAATTTTTGTGGA
TGATGCAGCTTTCGAAGTTGCATTTAAAGAATTACAAGCAGAATTAAAACAAGCATCATCTTACAAAGGAACCTTGAACA
AGGGTGGTGCTGCCTTTTTAGCAGCATTAGAATATGTCTTAGATGTCTCACGTAAATTAGAAACATTGTATGTTTACAGT
CATTTAAAAAATGATCAAGATACGGCAAATACAACATACCAAGCGCTTTATGCTCGTGCAAGTAGTTTATTAGCACAAAC
GAGTGAAGCTATCTCTTGGTTAGAACCAGAATTGTTGACACTAAGTGATGAAACAATTTGGAGCTATTTTGACGAAGAAC
CAAAATTAGAAGGGTATCGTCATTTTGTGAAACAAACGGTAGACAATCGTGCACATGTGTTACCGGCGGAACAAGAAGCA
TTGCTAGCTGCAGCAGGAGAAATTTTTGGCTCACCAAGCAATACTTTCTCAGTCTTAAATAATGCCGATTTAGTTTTCCC
AACCATTGAAGGCGAAGACGGAGAAAAAATTCAATTATCACATGGTATTTATGGTCAATTATTAGAAAGTACTGACCGTC
GTGTACGTGAAGAAGCATTTAAAGGTTTATACAGTGTTTACGAGCAATTCCGGAACACCTTTGCTTCTACTTTAAGTGCG
AATGTGAAAGCACACAATTACAAAGCAAAAGTACGCAAATTTGCTTCTGCACGTGAAGCGGCATTAAGTAGTAACCATAT
TCCTGAAAGTGTTTATGATACATTAGTGGATGTAGTGAATCAAAATCTACCATTGTTACATCGTTACATGGAACTGCGCA
AACGTTTGTTAAATCTCGATGATTTGCACATGTACGATGTATATACGCCTTTATTAGGTGAAGCACCAATTAGTTATACG
TATGACCAAGCGGTAGAAAAAGCGATTCAAGCGCTAGAGCCAATGGGTGAAGAGTATCTAACTGTTGTGAAAGAAGCCTT
TAATAATCGTTGGATTGATGTGGTTGAGAATAAAGGAAAACGTAGTGGTGCGTATTCTTCAGGAGCATATGATACCTTGC
CATATATTTTAATGAATTGGCATGATACTTTGGATCAATTATTTACGTTGGTTCATGAAATGGGACATAGTGTTCATAGT
TACTTTACTCGTAGCAATCAACCTTATGTGTATGGTGATTATTCGATTTTCTTAGCAGAGATTGCTTCGACAACCAATGA
AAATATTTTAACAGAACATTTGTTAGAAACTGAAACTGATCCACGTGTTCGCGCATATGTGTTAAATCATTATTTAGATG
GTTTTAAAGGAACAGTCTTCCGTCAAACACAATTTGCGGAATTTGAACATTTTATGCATGTTGAAGATGCAAAAGGTACA
CCACTAACAAGCGAATTTTTAAGTGAAAGTTATGGCGCTTTAAATAAAAAATATTATGGCGAAGCACTAGCTGATGATCC
GGAAATTCGTTTAGAATGGTCACGTATTCCTCATTTCTATTACAATTATTATGTTTTCCAATATTCAACAGGATTTTCTG
CTGCATCTGCTTTAGCCGGAAAAATTCTTTCAGAAGGACCAGCTGCATTAGAGCGTTACTTAAACTATCTAAAAGCTGGA
AATAGCGATTATCCAATCGAAGTCATGAAAAAAGCCGGTGTTGATATGACACAAGCAGACTATATTGAAGACGCGATGAA
GATGTTTGAACAACGTCTGAATGAATTAGAAGCATTAGTCGAAGAATTAGAGAACTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-587)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

55.649

98.017

0.545

Multiple sequence alignment