Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ACLN1Y_RS04840 Genome accession   NZ_CP180194
Coordinates   1084622..1086421 (-) Length   599 a.a.
NCBI ID   WP_054608275.1    Uniprot ID   A0A0P7J3G4
Organism   Apilactobacillus kunkeei strain CA1     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1079622..1091421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLN1Y_RS04810 (ACLN1Y_04810) - 1079964..1080476 (-) 513 WP_054608271.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  ACLN1Y_RS04815 (ACLN1Y_04815) - 1080491..1081342 (-) 852 WP_301945544.1 methyltransferase domain-containing protein -
  ACLN1Y_RS04820 (ACLN1Y_04820) - 1081438..1082325 (-) 888 WP_414826973.1 RluA family pseudouridine synthase -
  ACLN1Y_RS04825 (ACLN1Y_04825) - 1082318..1083127 (-) 810 WP_054608274.1 NAD kinase -
  ACLN1Y_RS04830 (ACLN1Y_04830) - 1083130..1083762 (-) 633 WP_053791884.1 GTP pyrophosphokinase family protein -
  ACLN1Y_RS04835 (ACLN1Y_04835) - 1083942..1084583 (+) 642 WP_051592213.1 DsbA family protein -
  ACLN1Y_RS04840 (ACLN1Y_04840) pepF 1084622..1086421 (-) 1800 WP_054608275.1 oligoendopeptidase F Regulator
  ACLN1Y_RS04845 (ACLN1Y_04845) - 1086460..1087614 (-) 1155 WP_301945546.1 competence protein CoiA -
  ACLN1Y_RS04850 (ACLN1Y_04850) - 1087607..1088671 (-) 1065 WP_301945547.1 adaptor protein MecA -
  ACLN1Y_RS04855 (ACLN1Y_04855) - 1088732..1089493 (-) 762 WP_301945548.1 MBL fold metallo-hydrolase -
  ACLN1Y_RS04860 (ACLN1Y_04860) - 1089586..1090038 (+) 453 WP_054608279.1 hypothetical protein -

Sequence

Protein


Download         Length: 599 a.a.        Molecular weight: 69076.23 Da        Isoelectric Point: 4.6504

>NTDB_id=1094419 ACLN1Y_RS04840 WP_054608275.1 1084622..1086421(-) (pepF) [Apilactobacillus kunkeei strain CA1]
MSEVKQLPKRSEVPEKLTWDLTTIYKTDNDFEADFKECVKEVEAVEKLKIDHFDAKTLLSDLKAIEKLERKVEKLYVYSS
LKSDADTSNSEYQSMNARCADLASKASSALAWFEPAVLNISEDDLKKMIAEESELADYTHYFDELFSQKDHILDAEHEKI
LSSLGNIFDTPSNVYGVMTNSDLKFPIVSDEDGNKVELSNGVYSKLLESTDRSVRKEAFQQLYTVYNQFKNTLASTLSGE
VKVHNFRASMRHFSSAKEAALSNNHIDEKVYQQLIDTVNKYLPLLHRYVKLRKKLLSLDEMHMYDLYTPLFGNSPISYNF
DEAKEESIKALSILGDDYIDHIKEEFNNRWIDVVENKGKRSGAYSSGVYDTNPYILLNWQDNLDNLFTLVHESGHSMHSY
YTTHNQPFQYGDYSIFLAEIASTTNENILTDYLLKNTDDVEVKKYVLNHFLDGFKGTIFRQTQFAEFEDFAHQQEQAGNP
LTAKMLSDFYYKLNQRYYGDGVVSDPEIAYEWARIPHFYMNYYVYQYATGFAAAIDLSDGICKNDQEAIDKYIGYLKSGS
SDYPLNVMKKAGIDMTNADYLENAFKVFEERLNELESLI

Nucleotide


Download         Length: 1800 bp        

>NTDB_id=1094419 ACLN1Y_RS04840 WP_054608275.1 1084622..1086421(-) (pepF) [Apilactobacillus kunkeei strain CA1]
ATGAGTGAAGTAAAACAATTACCAAAGAGATCAGAAGTACCAGAAAAATTAACCTGGGACTTAACAACTATCTATAAGAC
AGATAATGACTTTGAAGCTGATTTCAAAGAATGCGTCAAAGAAGTCGAAGCTGTTGAAAAGTTAAAGATTGATCATTTTG
ATGCCAAAACACTTTTAAGTGATTTAAAAGCAATCGAGAAACTAGAACGTAAAGTTGAAAAATTATATGTGTACTCATCG
TTGAAGAGTGATGCTGATACATCAAATTCAGAATACCAAAGCATGAATGCAAGATGTGCTGATTTAGCATCTAAAGCATC
ATCTGCACTAGCGTGGTTTGAACCGGCGGTTTTAAACATCAGTGAAGATGATCTAAAGAAGATGATAGCTGAAGAATCAG
AACTAGCAGATTACACACACTACTTTGATGAACTATTCAGCCAAAAGGACCATATCTTAGATGCTGAACATGAAAAAATT
CTATCAAGTTTAGGTAACATCTTTGATACCCCTTCAAACGTCTATGGTGTAATGACCAATTCCGACTTGAAGTTCCCAAT
TGTATCAGACGAAGACGGTAACAAGGTTGAACTATCAAACGGGGTCTACAGTAAGTTACTTGAATCCACAGACAGAAGTG
TTCGTAAGGAAGCATTCCAACAGTTATACACAGTTTATAACCAATTCAAGAACACTTTAGCATCAACACTTTCTGGTGAA
GTGAAGGTGCATAACTTTAGAGCTTCAATGCGTCACTTTAGCTCAGCTAAGGAAGCTGCATTGAGCAATAACCATATCGA
TGAAAAGGTATACCAACAACTAATTGATACTGTTAATAAGTACCTACCTTTATTACATCGCTACGTTAAACTAAGAAAGA
AGCTACTTTCTTTAGATGAAATGCACATGTATGACTTATACACACCTTTATTTGGTAATTCACCAATCTCATACAACTTT
GATGAAGCCAAGGAAGAATCAATTAAGGCATTATCAATCCTTGGGGATGATTACATTGATCATATCAAGGAAGAATTTAA
CAATCGTTGGATTGATGTAGTTGAAAACAAGGGGAAGAGAAGTGGGGCATACTCATCAGGAGTATACGACACTAACCCAT
ACATCTTATTAAACTGGCAAGATAACCTTGATAACTTGTTTACACTTGTTCACGAATCAGGTCACAGTATGCACAGTTAC
TACACAACCCATAACCAACCATTCCAATATGGTGATTACTCAATCTTCTTAGCCGAAATCGCATCAACAACTAACGAAAA
TATCTTAACCGATTATCTTTTGAAGAATACCGATGATGTTGAAGTTAAAAAGTACGTATTAAATCACTTCCTAGATGGTT
TCAAAGGAACTATATTCAGACAAACCCAATTTGCTGAATTTGAAGACTTTGCTCACCAACAAGAACAAGCGGGGAACCCA
CTAACAGCTAAGATGCTAAGTGATTTCTACTACAAGTTAAACCAACGCTATTATGGTGACGGAGTGGTATCTGATCCAGA
AATCGCATACGAATGGGCCAGAATTCCGCACTTCTACATGAATTACTATGTATATCAATATGCTACTGGTTTTGCAGCCG
CCATTGATTTATCAGATGGCATCTGTAAAAACGACCAAGAAGCAATTGATAAGTACATCGGTTACCTAAAATCAGGTAGT
TCTGATTATCCATTAAACGTAATGAAAAAAGCTGGTATCGACATGACTAATGCTGATTACCTAGAAAATGCATTCAAGGT
CTTTGAAGAAAGATTAAATGAATTAGAATCATTAATTTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(118-185)

Peptidase family M3 (Peptidase_M3)

(206-586)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0P7J3G4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.269

98.664

0.506

Multiple sequence alignment