Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACLN1Y_RS01930 Genome accession   NZ_CP180194
Coordinates   505184..506560 (+) Length   458 a.a.
NCBI ID   WP_034534706.1    Uniprot ID   A0A837B029
Organism   Apilactobacillus kunkeei strain CA1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 500184..511560
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLN1Y_RS01905 (ACLN1Y_01905) - 500577..501530 (+) 954 WP_301945639.1 DMT family transporter -
  ACLN1Y_RS01910 (ACLN1Y_01910) - 501545..502213 (+) 669 WP_301945638.1 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase -
  ACLN1Y_RS01915 (ACLN1Y_01915) - 502250..503590 (-) 1341 WP_301945637.1 aminopeptidase C -
  ACLN1Y_RS01920 (ACLN1Y_01920) rpiA 503697..504386 (-) 690 WP_034531888.1 ribose-5-phosphate isomerase RpiA -
  ACLN1Y_RS01925 (ACLN1Y_01925) - 504620..505156 (+) 537 WP_034531890.1 dUTP diphosphatase -
  ACLN1Y_RS01930 (ACLN1Y_01930) radA 505184..506560 (+) 1377 WP_034534706.1 DNA repair protein RadA Machinery gene
  ACLN1Y_RS01935 (ACLN1Y_01935) - 506582..507673 (+) 1092 WP_414827346.1 PIN/TRAM domain-containing protein -
  ACLN1Y_RS01940 (ACLN1Y_01940) gltX 507783..509273 (+) 1491 WP_054605405.1 glutamate--tRNA ligase -
  ACLN1Y_RS01945 (ACLN1Y_01945) cysS 509394..510800 (+) 1407 WP_414827347.1 cysteine--tRNA ligase -
  ACLN1Y_RS01950 (ACLN1Y_01950) - 510801..511223 (+) 423 WP_034534704.1 Mini-ribonuclease 3 -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49752.94 Da        Isoelectric Point: 6.4050

>NTDB_id=1094407 ACLN1Y_RS01930 WP_034534706.1 505184..506560(+) (radA) [Apilactobacillus kunkeei strain CA1]
MAKVKTQFVCEECGYISPKYLGHCPNCGKWNTFEEQTVQKETSSLKSTHRMDFNGQQTKPQLIKDVKFEKESRFETESQE
FNRVLGGGIVPGSLILIGGDPGIGKSTLLLQISGQLGAKDQRVLYVSGEESASQIKLRAERLSVNGSNMYLYPETDMGAI
KSAIDEIKPDAVVIDSVQTISEPEVDSAIGSVSQVRAITADLMSIAKTNGITIFVVGHVTKGGSIAGPKTLEHMVDTVLY
FEGDMHHSYRILRAVKNRFGSTDELGIFDMQESGLREVANPSEVFLEERLKDANGSAIVVSIEGTRPILVEIQALVTPSV
FGNAQRTATGIDRNRVAVLMAVLEKRAGLMLQNQDAFLKAAGGVKLNEPAIDLAVAISVASSYKNRGTDPSECYIGEIGL
TGEIRRVNRIEQRVLEAQKLGFKRVLIPKHNMSGWTAPDGIEVVGVSTLAQAIKIALN

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=1094407 ACLN1Y_RS01930 WP_034534706.1 505184..506560(+) (radA) [Apilactobacillus kunkeei strain CA1]
GTGGCTAAAGTAAAGACCCAATTTGTTTGCGAAGAATGTGGATACATTTCACCAAAGTACCTGGGACATTGTCCTAACTG
TGGAAAATGGAACACATTTGAAGAACAAACCGTTCAAAAAGAAACATCGAGTTTGAAATCGACTCACCGAATGGATTTCA
ATGGTCAGCAAACAAAACCACAACTAATCAAGGACGTTAAGTTCGAAAAGGAATCACGTTTTGAAACTGAATCCCAAGAA
TTTAACCGTGTATTAGGTGGCGGAATTGTTCCGGGCTCATTAATTTTAATTGGTGGGGATCCTGGTATCGGGAAATCCAC
ACTGTTACTTCAAATTTCTGGCCAATTAGGTGCTAAGGACCAACGTGTTCTATATGTATCTGGGGAAGAAAGTGCCAGTC
AAATTAAGCTAAGAGCGGAACGTTTATCCGTGAATGGCTCCAACATGTATCTATATCCAGAAACTGATATGGGTGCCATC
AAGTCTGCCATTGATGAGATTAAACCAGATGCAGTCGTAATTGACTCTGTTCAAACCATTTCTGAACCAGAGGTTGATTC
CGCAATTGGGTCCGTATCACAGGTAAGAGCAATTACCGCTGATTTAATGTCCATTGCAAAGACCAATGGAATTACAATCT
TTGTGGTTGGCCACGTTACCAAGGGTGGATCAATTGCCGGACCTAAGACTCTGGAACACATGGTTGATACTGTTTTATAC
TTTGAAGGAGACATGCATCATTCATACCGTATCTTAAGAGCCGTGAAGAACCGTTTTGGTTCAACCGACGAGTTAGGGAT
TTTTGATATGCAAGAATCCGGATTACGAGAAGTTGCTAATCCATCAGAGGTCTTCTTGGAAGAACGTTTGAAGGACGCTA
ATGGATCTGCAATCGTTGTTTCGATTGAAGGAACTAGACCAATATTAGTCGAAATTCAGGCACTGGTAACACCTTCCGTA
TTTGGGAACGCCCAAAGAACAGCTACCGGGATTGACCGTAACCGTGTAGCCGTTTTAATGGCGGTTCTTGAAAAGAGAGC
GGGACTAATGCTACAAAACCAAGATGCCTTCTTAAAGGCTGCTGGTGGAGTTAAGTTAAACGAACCAGCAATCGATTTAG
CGGTAGCCATTAGTGTGGCATCAAGTTACAAGAACAGGGGAACCGACCCTAGTGAATGTTACATTGGTGAAATTGGTTTA
ACTGGTGAAATTAGACGAGTTAACCGCATTGAACAACGTGTTTTAGAAGCGCAAAAGCTGGGCTTTAAGCGCGTATTAAT
ACCAAAACATAATATGTCAGGATGGACTGCTCCAGACGGAATTGAAGTCGTTGGTGTATCCACACTGGCTCAAGCGATTA
AAATCGCACTTAACTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(364-431)

AAA domain (AAA_25)

(71-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A837B029

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

63.216

99.127

0.627
  radA Streptococcus pneumoniae Rx1

63.216

99.127

0.627
  radA Streptococcus pneumoniae D39

63.216

99.127

0.627
  radA Streptococcus pneumoniae R6

63.216

99.127

0.627
  radA Streptococcus pneumoniae TIGR4

63.216

99.127

0.627
  radA Streptococcus mitis SK321

63.216

99.127

0.627
  radA Bacillus subtilis subsp. subtilis str. 168

61.707

99.782

0.616

Multiple sequence alignment