Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   L1F34_RS10920 Genome accession   NZ_CP180174
Coordinates   2226525..2227493 (-) Length   322 a.a.
NCBI ID   WP_017000362.1    Uniprot ID   A0AAX3W5Q2
Organism   Mammaliicoccus lentus strain B3     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2224770..2254909 2226525..2227493 within 0


Gene organization within MGE regions


Location: 2224770..2254909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1F34_RS10910 (L1F34_002144) - 2224770..2225570 (-) 801 WP_064204701.1 ABC transporter ATP-binding protein -
  L1F34_RS10915 (L1F34_002145) - 2225567..2226532 (-) 966 WP_017000361.1 iron chelate uptake ABC transporter family permease subunit -
  L1F34_RS10920 (L1F34_002146) ceuB 2226525..2227493 (-) 969 WP_017000362.1 ABC transporter permease Machinery gene
  L1F34_RS10925 (L1F34_002147) - 2227618..2228046 (-) 429 WP_064210866.1 FixH family protein -
  L1F34_RS10930 (L1F34_002148) nrdF 2228300..2229271 (-) 972 WP_064204699.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  L1F34_RS10935 (L1F34_002149) nrdE 2229299..2231404 (-) 2106 WP_017000365.1 class 1b ribonucleoside-diphosphate reductase subunit alpha -
  L1F34_RS10940 (L1F34_002150) nrdI 2231376..2231765 (-) 390 WP_017000366.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -
  L1F34_RS10945 (L1F34_002151) - 2232139..2233023 (+) 885 WP_017000367.1 DMT family transporter -
  L1F34_RS10950 (L1F34_002152) queF 2233027..2233527 (+) 501 WP_017000368.1 preQ(1) synthase -
  L1F34_RS10955 (L1F34_002153) - 2233947..2235461 (+) 1515 WP_017000369.1 peptide MFS transporter -
  L1F34_RS10960 (L1F34_002154) - 2235637..2237139 (+) 1503 WP_135031305.1 peptide MFS transporter -
  L1F34_RS10965 (L1F34_002155) - 2237232..2237810 (-) 579 WP_017000371.1 5' nucleotidase, NT5C type -
  L1F34_RS10970 (L1F34_002156) hisC 2237875..2238942 (-) 1068 WP_415363177.1 histidinol-phosphate transaminase -
  L1F34_RS10975 (L1F34_002157) - 2239174..2240688 (-) 1515 WP_064204696.1 ABC transporter permease/substrate-binding protein -
  L1F34_RS10980 (L1F34_002158) - 2240688..2241647 (-) 960 WP_017000373.1 ABC transporter ATP-binding protein -
  L1F34_RS10985 (L1F34_002159) recQ 2241739..2243517 (-) 1779 WP_017000374.1 DNA helicase RecQ -
  L1F34_RS10990 (L1F34_002160) - 2243539..2245410 (-) 1872 WP_064210864.1 ABC-F family ATP-binding cassette domain-containing protein -
  L1F34_RS10995 (L1F34_002161) - 2245496..2246311 (+) 816 WP_064210863.1 ZIP family metal transporter -
  L1F34_RS11000 (L1F34_002162) ltaS 2246420..2248360 (-) 1941 WP_135031309.1 polyglycerol-phosphate lipoteichoic acid synthase LtaS -
  L1F34_RS11005 (L1F34_002163) - 2248550..2249566 (-) 1017 WP_415363181.1 biotin-dependent carboxyltransferase family protein -
  L1F34_RS11010 (L1F34_002164) - 2249557..2250258 (-) 702 WP_017000379.1 carboxyltransferase domain-containing protein -
  L1F34_RS11015 (L1F34_002165) - 2250298..2250510 (-) 213 WP_017000380.1 hypothetical protein -
  L1F34_RS11020 (L1F34_002166) - 2250572..2252320 (-) 1749 WP_415363184.1 bifunctional chorismate-binding protein/class IV aminotransferase -
  L1F34_RS11025 (L1F34_002167) - 2252298..2252903 (-) 606 WP_218706439.1 anthranilate synthase component II -
  L1F34_RS11030 (L1F34_002168) queC 2253107..2253775 (+) 669 WP_257504807.1 7-cyano-7-deazaguanine synthase QueC -
  L1F34_RS11035 (L1F34_002169) queD 2253775..2254206 (+) 432 WP_017000384.1 6-carboxytetrahydropterin synthase QueD -
  L1F34_RS11040 (L1F34_002170) queE 2254199..2254909 (+) 711 WP_103268636.1 7-carboxy-7-deazaguanine synthase QueE -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35426.02 Da        Isoelectric Point: 10.4592

>NTDB_id=1094232 L1F34_RS10920 WP_017000362.1 2226525..2227493(-) (ceuB) [Mammaliicoccus lentus strain B3]
MGKFLMRLDVLIVLLVIATFFSIFIGVSEVRPLQILSLTDEQKNILVSSRIPRTVSIIISGSCLAICGLIMQQLTRNKFV
SPTTAGTMDWAKLGVLISLILFPDTNILFKLLFATLLSLFGTMLFMQILQRIQFKDVIFIPLVGIMLGNIVSSFSTFVAL
RTNAVQSIGNFMQGNFSIITSGRYEILYISIPLLIIAYIFANKFTIAGMGKDFSVNLGLNYHRIVNIGLIIASIITALVV
VTVGMMPFLGLIIPNLISIFRGDHLKNALPHTAILGALFVMICDILGRLIIFPYEITIGLTIGVIGSFIFIVLLMKGRSK
NA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=1094232 L1F34_RS10920 WP_017000362.1 2226525..2227493(-) (ceuB) [Mammaliicoccus lentus strain B3]
ATGGGAAAGTTTTTAATGCGTTTAGATGTATTGATTGTATTATTAGTTATCGCAACATTCTTCTCAATATTTATTGGCGT
TTCAGAAGTGAGACCTTTACAAATATTAAGTCTCACAGATGAACAGAAAAATATACTAGTATCTAGTAGAATTCCTAGAA
CGGTTAGTATTATTATTTCAGGAAGTTGTTTAGCAATATGCGGTCTGATTATGCAACAGTTAACGAGAAATAAATTTGTT
TCTCCAACAACAGCAGGCACGATGGATTGGGCAAAGTTAGGTGTTTTAATTTCACTGATACTATTTCCAGACACGAATAT
ATTATTTAAACTTTTATTCGCAACATTACTAAGTTTATTTGGAACAATGTTATTCATGCAAATCCTACAAAGAATTCAAT
TCAAAGATGTTATTTTTATACCACTTGTAGGGATAATGCTTGGTAACATTGTTTCTAGTTTTTCAACCTTTGTTGCTTTA
AGAACAAACGCTGTTCAAAGCATAGGAAACTTTATGCAAGGTAACTTTTCTATCATTACTAGTGGGCGATACGAAATTTT
ATACATAAGTATTCCTTTATTGATAATTGCGTATATTTTTGCCAACAAATTTACGATTGCAGGTATGGGAAAGGACTTCA
GTGTCAACTTAGGATTAAATTACCATAGAATAGTTAATATTGGTTTAATCATTGCATCTATCATTACAGCACTAGTTGTT
GTAACAGTAGGAATGATGCCTTTCTTAGGATTAATTATACCGAACTTAATTTCAATATTCAGAGGTGATCATCTTAAAAA
TGCTTTACCGCACACTGCAATCTTAGGCGCATTGTTTGTTATGATATGCGACATTTTAGGAAGACTGATTATATTCCCAT
ACGAAATTACAATTGGTTTAACAATCGGTGTAATTGGTAGCTTTATTTTCATAGTTTTATTGATGAAAGGACGTTCGAAA
AATGCTTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(14-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.473

98.447

0.497

Multiple sequence alignment