Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   L1F34_RS06250 Genome accession   NZ_CP180174
Coordinates   1262889..1265261 (+) Length   790 a.a.
NCBI ID   WP_016998513.1    Uniprot ID   -
Organism   Mammaliicoccus lentus strain B3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1257889..1270261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1F34_RS06230 (L1F34_001206) sal(B) 1258198..1259823 (+) 1626 WP_239703685.1 ABC-F type ribosomal protection protein Sal(B) -
  L1F34_RS06235 (L1F34_001207) - 1259883..1261031 (+) 1149 WP_239703684.1 cysteine desulfurase family protein -
  L1F34_RS06240 (L1F34_001208) mnmA 1261024..1262133 (+) 1110 WP_016998511.1 tRNA 2-thiouridine(34) synthase MnmA -
  L1F34_RS06245 (L1F34_001209) - 1262221..1262886 (+) 666 WP_016998512.1 tetratricopeptide repeat protein -
  L1F34_RS06250 (L1F34_001210) recD2 1262889..1265261 (+) 2373 WP_016998513.1 ATP-dependent RecD-like DNA helicase Machinery gene
  L1F34_RS06255 (L1F34_001211) alaS 1265510..1268140 (+) 2631 WP_415364525.1 alanine--tRNA ligase -
  L1F34_RS06260 (L1F34_001212) - 1268208..1268477 (+) 270 WP_016998515.1 IreB family regulatory phosphoprotein -
  L1F34_RS06265 (L1F34_001213) ruvX 1268470..1268898 (+) 429 WP_016998516.1 Holliday junction resolvase RuvX -
  L1F34_RS06270 (L1F34_001214) - 1268921..1269226 (+) 306 WP_016998517.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 790 a.a.        Molecular weight: 89889.16 Da        Isoelectric Point: 4.6379

>NTDB_id=1094220 L1F34_RS06250 WP_016998513.1 1262889..1265261(+) (recD2) [Mammaliicoccus lentus strain B3]
MENLSLFDLSHVKGEVIRILFQNSDNYYTVIKVDVMDSNEDFDHEVTIVGYFPQIVEGETYLFKGKVIEHPKYGKQLQAD
TFEKELPQTKQGVIHYLSSDLFKGIGKKTAETIVNKLGENALQKILDDPDVLEEIPKLNKQKRSTIVESIRENQAIERIM
IKLNELGFGPKLAMSIYQTYKEETMNIIKQSPYRLVMDINGIGFQRADQIAEQIGISKDHNERVVAGVNYYLDQQSLQNG
HTFLPIDILINGAYELLNHNQPEVVAKEQINDVIVEMSEESKIIIEDNNCFMPSLYYSEAKSVQIMHRLYQHQEDLKEIE
KSDLQLHIGEIEDMNDVSYAEGQKNALETAINNKMMLLTGGPGTGKTTVIRGICELYSEIHGVSLDYDDYQEGTDFPIVL
AAPTGRAAKRLSESTGLEAMTIHRLIGWSKDTQPDDVLDNDIHAHLIILDEMSMVDTWLMYQFLRAVPDYAQIIFVGDED
QLPSVGPGQIFKDLIDSKVIPRVNLTEVYRQQEGSSIIDLAHKIKNNIPVSINEKHHDRSFISCNSNQIASVVEKVVQGA
VKKGYNMQDIQVLAPIYRGPAGINKLNQLLQDILNPKTEETRFLQYGEVEYREQDKVLQLINRPDDNVFNGDIGVVIGVY
KAEENALGKDVIIVDYEGNEITYTKQDLSEVTHAYCCSIHKSQGSEFPIVIMPIVRQYFRMLQKNILYTGLTRAKQSLVV
CGEENAFNQGIKTLGNGRMTSFDTKLKLYFSNDDTEEPTEIKNLILTEENMYEVDPMINMQNKTPYDFMK

Nucleotide


Download         Length: 2373 bp        

>NTDB_id=1094220 L1F34_RS06250 WP_016998513.1 1262889..1265261(+) (recD2) [Mammaliicoccus lentus strain B3]
TTGGAAAATTTATCTTTATTTGATCTTTCACATGTTAAAGGTGAAGTTATTAGAATATTATTTCAAAATAGTGATAACTA
TTACACTGTTATAAAAGTTGATGTGATGGATTCAAATGAAGATTTTGACCATGAAGTCACTATAGTAGGGTACTTTCCTC
AAATTGTAGAAGGTGAAACTTATCTTTTTAAAGGTAAGGTTATTGAACATCCTAAATATGGAAAGCAACTTCAAGCTGAC
ACTTTCGAGAAAGAATTACCTCAAACGAAACAAGGTGTCATTCATTATTTGTCCAGTGATTTATTTAAAGGAATAGGTAA
GAAAACTGCAGAGACAATCGTCAATAAATTGGGTGAAAATGCACTACAAAAAATATTGGATGATCCAGATGTATTAGAAG
AAATACCTAAATTAAACAAACAAAAACGTAGTACTATAGTAGAATCTATAAGAGAAAATCAAGCGATAGAACGCATAATG
ATAAAGTTAAATGAATTAGGGTTTGGACCTAAACTAGCCATGAGTATTTATCAAACGTATAAAGAAGAAACAATGAACAT
CATAAAACAGTCTCCTTATCGATTAGTTATGGATATAAATGGTATTGGTTTTCAAAGAGCAGACCAAATCGCTGAACAAA
TTGGTATTTCAAAAGACCATAATGAACGTGTTGTGGCGGGTGTGAATTACTATTTAGATCAGCAATCGTTACAAAACGGT
CATACATTTTTACCGATTGATATTTTAATCAATGGTGCATATGAATTATTAAATCATAACCAACCTGAAGTTGTAGCAAA
AGAGCAAATTAATGATGTTATCGTTGAGATGAGTGAAGAAAGTAAAATTATAATAGAAGACAATAATTGTTTCATGCCAT
CTTTATATTACTCAGAAGCTAAAAGTGTTCAAATTATGCATAGATTGTATCAACACCAAGAAGATTTAAAAGAAATTGAA
AAAAGTGATTTACAACTTCATATTGGTGAAATAGAAGACATGAATGACGTTTCTTATGCTGAAGGGCAGAAGAATGCACT
CGAAACAGCCATCAATAATAAAATGATGTTATTAACAGGTGGTCCTGGTACAGGTAAGACGACTGTTATAAGAGGAATAT
GTGAGCTATATTCTGAAATTCATGGCGTTAGTTTGGATTATGATGATTATCAAGAAGGAACTGATTTTCCAATAGTTTTA
GCAGCTCCAACAGGAAGAGCAGCTAAAAGATTAAGTGAATCAACTGGTTTAGAAGCCATGACTATCCATAGATTGATAGG
TTGGAGTAAAGATACTCAACCTGATGATGTATTAGATAATGATATACATGCTCATTTAATTATATTGGATGAAATGTCTA
TGGTTGATACATGGTTAATGTACCAATTTTTAAGAGCAGTACCTGATTATGCGCAAATTATTTTTGTAGGTGATGAAGAT
CAATTACCTTCAGTTGGACCTGGTCAAATATTCAAAGATTTAATTGATTCAAAAGTCATTCCACGTGTGAATTTAACAGA
AGTATATAGGCAACAAGAAGGTTCATCAATCATTGATTTAGCACATAAAATAAAAAATAATATTCCAGTTTCTATTAATG
AAAAACATCATGACCGCTCATTTATCAGTTGTAACAGTAACCAAATTGCTTCAGTCGTTGAAAAAGTTGTTCAAGGTGCA
GTTAAAAAAGGATATAATATGCAAGATATTCAAGTTCTTGCGCCAATATATCGTGGTCCAGCAGGTATCAATAAGTTAAA
TCAATTACTTCAAGACATTTTAAATCCTAAAACTGAAGAAACAAGGTTTTTACAATACGGTGAAGTAGAGTATCGTGAAC
AGGATAAAGTACTACAGCTTATTAATAGACCGGACGATAACGTGTTTAATGGTGATATTGGTGTTGTTATAGGCGTATAT
AAAGCTGAAGAAAATGCTTTAGGGAAAGATGTTATTATCGTTGATTATGAGGGAAATGAAATAACTTACACGAAACAAGA
TTTATCAGAGGTTACACATGCATATTGTTGTTCAATTCATAAATCACAAGGCTCGGAATTTCCGATTGTTATCATGCCTA
TTGTTAGACAATACTTTAGAATGTTACAGAAAAACATTTTATATACTGGTTTAACAAGAGCAAAACAGTCTTTAGTTGTC
TGTGGTGAGGAAAATGCTTTTAATCAAGGTATTAAAACATTAGGAAATGGACGTATGACGTCTTTCGATACAAAACTTAA
ACTGTATTTTAGTAATGATGATACAGAGGAACCAACTGAAATCAAAAATTTGATACTGACAGAAGAAAATATGTATGAAG
TTGATCCAATGATAAACATGCAAAATAAAACACCTTATGACTTCATGAAATAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(673-721)

Helix-hairpin-helix containing domain (HHH_RecD2)

(152-243)

AAA domain (AAA_30)

(339-546)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(586-644)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

50.252

100

0.505

Multiple sequence alignment