Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   ACMHYC_RS10600 Genome accession   NZ_CP180027
Coordinates   2203215..2204171 (-) Length   318 a.a.
NCBI ID   WP_005286418.1    Uniprot ID   -
Organism   Acinetobacter courvalinii isolate 2024CK-01798     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2198215..2209171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMHYC_RS10575 (ACMHYC_10570) - 2198613..2199827 (+) 1215 WP_005230935.1 MFS transporter -
  ACMHYC_RS10580 (ACMHYC_10575) - 2199849..2200457 (-) 609 WP_199948522.1 DUF2238 domain-containing protein -
  ACMHYC_RS10585 (ACMHYC_10580) - 2200551..2201504 (-) 954 WP_199948418.1 siderophore ABC transporter substrate-binding protein -
  ACMHYC_RS10590 (ACMHYC_10585) - 2201514..2202278 (-) 765 WP_414659181.1 ABC transporter ATP-binding protein -
  ACMHYC_RS10595 (ACMHYC_10590) - 2202269..2203225 (-) 957 WP_199948419.1 iron chelate uptake ABC transporter family permease subunit -
  ACMHYC_RS10600 (ACMHYC_10595) ceuB 2203215..2204171 (-) 957 WP_005286418.1 ABC transporter permease Machinery gene
  ACMHYC_RS10605 (ACMHYC_10600) - 2204455..2205438 (-) 984 WP_414659182.1 ion transporter -
  ACMHYC_RS10610 (ACMHYC_10605) - 2205708..2207165 (+) 1458 Protein_2077 DASS family sodium-coupled anion symporter -
  ACMHYC_RS10615 (ACMHYC_10610) - 2207213..2207713 (-) 501 WP_199948423.1 hypothetical protein -
  ACMHYC_RS10620 (ACMHYC_10615) - 2207724..2208305 (-) 582 WP_414659884.1 hypothetical protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 34655.81 Da        Isoelectric Point: 9.8497

>NTDB_id=1094096 ACMHYC_RS10600 WP_005286418.1 2203215..2204171(-) (ceuB) [Acinetobacter courvalinii isolate 2024CK-01798]
MIKRRYLILLLLPLAMISLFVGVGEMSLAGLWAGNPQDWQLFWTSRLPRLMAIVVAGAGLSVCGLIMQSLSRNRFVSPTT
AGLYDCARLGVLVSIILLPSASIFIKTGFAIAVTLIGAMAFMSILATLKHRDTVFVPLVGMIFGSIISAFTTFIALQLDL
LQNLAGWLQGDFSTILNGQYELIYLSVPVLILIYFFANRFVLAGLGQDFATNLGLNYKQTLFIGLLLVSVITGVVIVTVG
AIPFLGLIVPNLVSLYLGDNIRKTLSHTALLGALLVLLCDVFGRVVIFPYEVSVSLIMGVVGSVIFLWLLLRRYRYAS

Nucleotide


Download         Length: 957 bp        

>NTDB_id=1094096 ACMHYC_RS10600 WP_005286418.1 2203215..2204171(-) (ceuB) [Acinetobacter courvalinii isolate 2024CK-01798]
ATGATTAAGCGGCGTTACCTGATTTTATTATTACTTCCACTGGCAATGATTTCCTTATTTGTCGGTGTAGGCGAGATGAG
TCTCGCGGGTTTGTGGGCGGGTAACCCTCAAGACTGGCAGCTGTTCTGGACCAGCCGTTTACCGCGTCTGATGGCAATTG
TTGTGGCAGGTGCGGGACTGAGTGTCTGCGGTCTGATCATGCAGTCGTTGAGTCGTAACCGTTTTGTGTCTCCCACTACC
GCAGGCCTATATGACTGTGCCCGTTTAGGCGTTCTGGTTTCAATCATTTTACTGCCCAGTGCTTCAATTTTTATTAAAAC
CGGTTTTGCCATTGCGGTAACGCTTATTGGCGCGATGGCCTTTATGAGTATTCTGGCGACGCTCAAGCATCGTGATACGG
TTTTTGTGCCGCTGGTGGGGATGATTTTTGGCAGTATCATTTCAGCCTTTACCACCTTTATTGCGCTACAACTGGACTTA
TTACAGAACTTGGCGGGTTGGCTTCAAGGGGACTTTTCCACCATTTTAAATGGGCAATACGAGCTGATCTATCTCAGTGT
ACCGGTATTGATTCTGATTTATTTCTTTGCCAATCGTTTTGTTCTGGCTGGCTTGGGACAGGATTTTGCCACCAATCTGG
GGCTGAATTATAAACAGACGCTTTTTATTGGCCTGTTACTGGTGTCAGTGATTACCGGGGTGGTGATTGTGACTGTCGGG
GCGATTCCATTTCTCGGTTTGATTGTACCGAATCTGGTAAGCCTATACCTTGGTGACAATATCCGCAAAACCCTTTCACA
TACTGCATTGTTGGGTGCTTTGCTGGTTCTGCTTTGCGATGTATTTGGTCGGGTGGTGATTTTCCCTTATGAGGTCTCTG
TCAGCCTGATTATGGGGGTAGTGGGCAGTGTCATTTTCCTGTGGCTGCTGCTTAGGAGATATCGCTATGCCTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(11-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.799

98.428

0.5

Multiple sequence alignment