Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   ACINK0_RS14105 Genome accession   NZ_CP179945
Coordinates   2781748..2784009 (+) Length   753 a.a.
NCBI ID   WP_414657022.1    Uniprot ID   -
Organism   Deinococcus sp. VB343     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2776748..2789009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACINK0_RS14075 (ACINK0_14075) scpB 2776949..2777503 (+) 555 WP_414657018.1 SMC-Scp complex subunit ScpB -
  ACINK0_RS14080 (ACINK0_14080) - 2777700..2778467 (+) 768 WP_414657019.1 DUF4388 domain-containing protein -
  ACINK0_RS14085 (ACINK0_14085) - 2778490..2779242 (-) 753 WP_339095710.1 TSUP family transporter -
  ACINK0_RS14090 (ACINK0_14090) - 2779305..2779724 (+) 420 WP_339095709.1 organic hydroperoxide resistance protein -
  ACINK0_RS14095 (ACINK0_14095) gatA 2779796..2781244 (-) 1449 WP_414657020.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  ACINK0_RS14100 (ACINK0_14100) comEA 2781357..2781737 (+) 381 WP_414657021.1 ComEA family DNA-binding protein Machinery gene
  ACINK0_RS14105 (ACINK0_14105) comEC 2781748..2784009 (+) 2262 WP_414657022.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACINK0_RS14110 (ACINK0_14110) - 2784042..2785016 (+) 975 WP_414657023.1 SIS domain-containing protein -
  ACINK0_RS14115 (ACINK0_14115) - 2785180..2785935 (+) 756 WP_414657024.1 serine/threonine-protein kinase -
  ACINK0_RS14120 (ACINK0_14120) - 2785942..2786172 (-) 231 WP_414657025.1 hypothetical protein -
  ACINK0_RS14125 (ACINK0_14125) msrA 2786169..2786732 (-) 564 WP_414657026.1 peptide-methionine (S)-S-oxide reductase MsrA -
  ACINK0_RS14130 (ACINK0_14130) - 2786989..2788857 (+) 1869 Protein_2767 1,4-alpha-glucan branching enzyme -

Sequence

Protein


Download         Length: 753 a.a.        Molecular weight: 79172.77 Da        Isoelectric Point: 10.4352

>NTDB_id=1094072 ACINK0_RS14105 WP_414657022.1 2781748..2784009(+) (comEC) [Deinococcus sp. VB343]
MTLPSYDPRTGEILENPAPTSQKKPGKRAPGGRLAWPVPLALGIVGGILLSLGLPWGWAALLVAAIVPMLDTRPLLAVLA
LLGGGLGYGAAQMQAREPDRIAPWVGGLVTLRGHWDGQFLTLDDPRARVALAPKPTQGPGELVVSGRLIRPEGRRTPGGF
DQAAWLRSQGGLLLPTPKAVLVRATVKDFEPEQGLRGWFRRGLSAGLSPRLAALMTAVELGERGDIGRETFDEGFSVRDA
FTRAGLAHLMALSGQNVALLTGTLIALLGLLGARPGWRYGLPLALLPVYLLLLVGLSPSITRAVLMGGVALLALSVGRGK
LDALGVVALAAAACLLLFPMWLLDVGFQLSFLAVLGLLLSVKLAQRLPAGWPQWLRLALAATVLAELATLPVIAHTFGQL
PLVGLPANLLAAPIMVALVPLGFLAGLLGPAGWLVNWATAPLASALLWVAQTFGSAPVLTWGNLSAGGFVAYGVAAAGAV
AWLLGRLRGQWALTLALACALLSWLPGQLRPPRELVFLDVGQGDSTLLRVPGLTMLVDGGGSVGSDYDVGKGTVLPALRA
LGVRKLDVVVATHADTDHIEGLSSVLRGLPVGELWVGHLKKGDPVLDAVLAAAQEKGVRVREIRRGDQISAGRVKVTALW
PEGKFWSTEDNENSVALRLESGPFAAALLGDLPDPTENFIHPGDLTLLKAAHHGSRYSTGTALLAQTTPKDVVISVGRNT
YGHPTQAVLDRIAAARARVWRTDQSGTIRWPLP

Nucleotide


Download         Length: 2262 bp        

>NTDB_id=1094072 ACINK0_RS14105 WP_414657022.1 2781748..2784009(+) (comEC) [Deinococcus sp. VB343]
ATGACCCTGCCCAGTTACGACCCACGCACGGGTGAAATTCTGGAAAATCCGGCCCCGACTTCGCAGAAAAAGCCGGGAAA
ACGTGCCCCAGGTGGGCGGCTGGCGTGGCCCGTTCCCCTGGCGCTGGGCATCGTCGGGGGCATTCTGCTGTCGTTGGGGC
TGCCCTGGGGCTGGGCGGCGCTGCTGGTCGCGGCCATTGTGCCCATGCTGGACACGCGCCCGCTGCTGGCCGTGCTGGCC
CTGCTGGGCGGCGGCCTGGGCTACGGCGCGGCGCAGATGCAGGCGCGGGAACCGGACCGAATTGCGCCCTGGGTGGGTGG
ACTGGTCACGTTGCGGGGCCACTGGGACGGGCAATTCCTGACGCTGGACGACCCCCGTGCGCGGGTGGCCCTGGCCCCCA
AGCCGACGCAGGGGCCGGGCGAGCTGGTGGTGTCGGGCCGTCTGATTCGCCCTGAGGGGCGGCGCACCCCCGGCGGCTTC
GACCAAGCGGCGTGGCTGCGTTCGCAGGGCGGCCTGCTGCTGCCGACGCCCAAGGCCGTGCTGGTGCGGGCCACCGTGAA
GGACTTCGAGCCCGAGCAGGGGCTGCGCGGCTGGTTTCGCCGGGGCCTGAGCGCGGGCCTGTCGCCACGCCTCGCCGCGC
TGATGACCGCAGTAGAACTGGGCGAACGCGGTGACATCGGGCGCGAAACCTTCGACGAGGGCTTTTCGGTGCGCGACGCC
TTCACCCGCGCGGGCCTGGCCCACCTGATGGCCCTCAGCGGGCAGAATGTCGCCCTGTTGACGGGAACCCTCATCGCCCT
GCTGGGCCTGCTGGGGGCGCGTCCCGGCTGGCGCTACGGGCTGCCGCTGGCGCTGCTGCCGGTCTATTTGCTGCTGCTGG
TCGGGCTGTCGCCCAGCATTACCCGCGCCGTGCTGATGGGCGGGGTGGCGCTGCTGGCCCTGAGCGTGGGGCGCGGCAAA
CTCGACGCGCTGGGCGTGGTCGCGCTGGCGGCGGCGGCCTGCTTGCTGCTGTTTCCCATGTGGCTGCTAGACGTGGGATT
TCAACTCTCGTTTCTGGCGGTGCTGGGGTTGCTGCTGTCGGTCAAGCTGGCGCAGCGGCTTCCGGCGGGCTGGCCCCAGT
GGCTCCGGCTGGCGCTGGCGGCGACGGTGCTGGCCGAACTCGCCACGCTGCCTGTCATCGCCCACACCTTCGGGCAATTG
CCACTGGTGGGCCTACCTGCCAACCTGCTTGCCGCGCCCATCATGGTCGCCCTGGTACCGCTCGGCTTTCTGGCGGGTCT
GCTCGGCCCTGCCGGGTGGCTGGTCAACTGGGCGACGGCACCGCTGGCCTCGGCCCTGCTGTGGGTGGCGCAGACCTTTG
GCAGCGCCCCGGTGCTGACCTGGGGCAACCTCAGCGCGGGGGGCTTTGTCGCTTACGGGGTGGCGGCAGCGGGCGCGGTG
GCCTGGCTGCTGGGACGGCTCCGGGGGCAGTGGGCACTTACGCTGGCGCTGGCCTGCGCCCTCTTGAGCTGGCTGCCGGG
CCAGCTTCGCCCGCCGCGTGAACTGGTGTTTCTGGACGTGGGCCAGGGCGACTCGACGCTGCTGCGCGTGCCGGGCCTGA
CCATGCTGGTGGACGGCGGCGGCTCGGTGGGCAGCGACTACGACGTGGGCAAAGGAACGGTGCTGCCTGCCCTGCGGGCG
CTGGGCGTTCGCAAACTGGACGTGGTGGTGGCGACCCATGCCGACACCGACCACATCGAGGGGCTGAGCAGTGTGCTGCG
GGGGCTACCCGTGGGCGAATTGTGGGTCGGTCATCTGAAGAAAGGCGACCCGGTGCTGGACGCGGTACTGGCGGCGGCGC
AGGAAAAGGGAGTACGCGTGCGCGAAATCCGGCGCGGCGATCAAATCAGCGCGGGCCGGGTGAAGGTGACAGCCCTGTGG
CCCGAAGGAAAATTCTGGTCCACCGAAGACAACGAGAATTCGGTGGCGCTGCGCCTCGAAAGCGGGCCTTTCGCCGCCGC
ACTCTTGGGCGACCTGCCCGACCCCACCGAGAATTTCATTCACCCTGGCGACCTGACCTTGCTCAAGGCCGCGCACCACG
GCAGCCGCTACAGCACAGGCACGGCGCTGCTGGCCCAGACCACGCCCAAAGATGTCGTCATCAGCGTGGGGCGCAACACC
TACGGCCACCCGACCCAGGCGGTCCTCGACCGCATCGCGGCGGCGCGGGCACGGGTCTGGCGCACCGACCAGAGCGGCAC
CATCCGCTGGCCCTTGCCCTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(237-483)

Beta-lactamase superfamily domain (Lactamase_B_2)

(561-689)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

82.4

99.602

0.821

Multiple sequence alignment