Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ACINK0_RS14100 Genome accession   NZ_CP179945
Coordinates   2781357..2781737 (+) Length   126 a.a.
NCBI ID   WP_414657021.1    Uniprot ID   -
Organism   Deinococcus sp. VB343     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2776357..2786737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACINK0_RS14075 (ACINK0_14075) scpB 2776949..2777503 (+) 555 WP_414657018.1 SMC-Scp complex subunit ScpB -
  ACINK0_RS14080 (ACINK0_14080) - 2777700..2778467 (+) 768 WP_414657019.1 DUF4388 domain-containing protein -
  ACINK0_RS14085 (ACINK0_14085) - 2778490..2779242 (-) 753 WP_339095710.1 TSUP family transporter -
  ACINK0_RS14090 (ACINK0_14090) - 2779305..2779724 (+) 420 WP_339095709.1 organic hydroperoxide resistance protein -
  ACINK0_RS14095 (ACINK0_14095) gatA 2779796..2781244 (-) 1449 WP_414657020.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  ACINK0_RS14100 (ACINK0_14100) comEA 2781357..2781737 (+) 381 WP_414657021.1 ComEA family DNA-binding protein Machinery gene
  ACINK0_RS14105 (ACINK0_14105) comEC 2781748..2784009 (+) 2262 WP_414657022.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACINK0_RS14110 (ACINK0_14110) - 2784042..2785016 (+) 975 WP_414657023.1 SIS domain-containing protein -
  ACINK0_RS14115 (ACINK0_14115) - 2785180..2785935 (+) 756 WP_414657024.1 serine/threonine-protein kinase -
  ACINK0_RS14120 (ACINK0_14120) - 2785942..2786172 (-) 231 WP_414657025.1 hypothetical protein -
  ACINK0_RS14125 (ACINK0_14125) msrA 2786169..2786732 (-) 564 WP_414657026.1 peptide-methionine (S)-S-oxide reductase MsrA -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13220.27 Da        Isoelectric Point: 9.8306

>NTDB_id=1094071 ACINK0_RS14100 WP_414657021.1 2781357..2781737(+) (comEA) [Deinococcus sp. VB343]
MSPNDRVWLSALASGTLLVGGLTLGPVLAPRPQAPAVTRTALPPVQTPAHTEPPTYPTTASVTPLISGRVNLNTATQEQL
EALPKVGPALAQKIIAGRPYRSLTDLDNVKGVGEATLRELTPLVTW

Nucleotide


Download         Length: 381 bp        

>NTDB_id=1094071 ACINK0_RS14100 WP_414657021.1 2781357..2781737(+) (comEA) [Deinococcus sp. VB343]
ATGTCCCCGAACGACAGAGTTTGGCTGTCGGCCCTCGCGTCCGGCACCTTGCTGGTCGGCGGCCTGACCCTCGGCCCGGT
CCTGGCCCCGCGCCCGCAGGCGCCCGCCGTGACCCGCACCGCCCTACCCCCAGTGCAGACCCCAGCCCACACCGAACCGC
CCACCTATCCGACCACCGCCAGCGTGACACCGCTGATCAGCGGGCGCGTCAACTTGAATACGGCGACTCAAGAACAACTT
GAGGCCCTGCCCAAAGTCGGCCCCGCCCTGGCGCAGAAAATCATCGCCGGGCGGCCTTACCGCTCACTCACCGACCTCGA
CAACGTCAAGGGTGTGGGCGAGGCTACTCTGCGCGAGCTGACGCCCCTGGTGACCTGGTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(69-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

80.159

100

0.802

Multiple sequence alignment