Detailed information NTG1094070

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: ACINK0_RS14065
• Genome accession: NZ_CP179945
• Coordinates: 2775019..2776239 (-)
• Length: 406 a.a.
• NCBI ID: WP_414657016.1
• Uniprot ID: -
• Organism: Deinococcus sp. VB343
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2770019..2781239

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACINK0_RS14040 (ACINK0_14040)	-	2771303..2771665 (-)	363	WP_339095717.1	hypothetical protein	-
ACINK0_RS14045 (ACINK0_14045)	rsmH	2771665..2772612 (-)	948	WP_414657015.1	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	-
ACINK0_RS14050 (ACINK0_14050)	mraZ	2772609..2773037 (-)	429	WP_303102124.1	division/cell wall cluster transcriptional repressor MraZ	-
ACINK0_RS14055 (ACINK0_14055)	-	2773333..2773683 (+)	351	WP_339095715.1	DUF423 domain-containing protein	-
ACINK0_RS14060 (ACINK0_14060)	-	2773706..2774848 (-)	1143	WP_339095714.1	FAD-dependent monooxygenase	-
ACINK0_RS14065 (ACINK0_14065)	pilC	2775019..2776239 (-)	1221	WP_414657016.1	type II secretion system F family protein	Machinery gene
ACINK0_RS14070 (ACINK0_14070)	-	2776296..2776952 (+)	657	WP_414657017.1	L-threonylcarbamoyladenylate synthase	-
ACINK0_RS14075 (ACINK0_14075)	scpB	2776949..2777503 (+)	555	WP_414657018.1	SMC-Scp complex subunit ScpB	-
ACINK0_RS14080 (ACINK0_14080)	-	2777700..2778467 (+)	768	WP_414657019.1	DUF4388 domain-containing protein	-
ACINK0_RS14085 (ACINK0_14085)	-	2778490..2779242 (-)	753	WP_339095710.1	TSUP family transporter	-
ACINK0_RS14090 (ACINK0_14090)	-	2779305..2779724 (+)	420	WP_339095709.1	organic hydroperoxide resistance protein	-

Sequence

Protein

• Length: 406 a.a.
• Molecular weight: 44488.13 Da
• Isoelectric Point: 9.0166

>NTDB_id=1094070 ACINK0_RS14065 WP_414657016.1 2775019..2776239(-) (pilC) [Deinococcus sp. VB343]
MPVYEYRARDREGKVLKSQMDAESEAQVRDALRARNLMILEIKAPKTGLNADVKIPGLTDRPPGLKQVAVFSKQLATLIN
AGVPLVQSLAILQRQVDNKTFETVLKKVRGDVESGTPLSEALQQHPKVFSRLFINLVRAGETSGTLDTVLERIADFQEKQ
LALQGKIKSALTYPVVVLVFALGITYFLLTTIVPQFASILTQLNAPLPFITRMLMAVSDFLRSSGLFIFLIVGVIFFAYR
WYYRTPKGRYVIDDIKLRLPVFGNLIQKSAISSFARTFGLLISSGVNIIESLEITKGTANNAIVEETIDNAKNVVISGDQ
MSSSLATSKVFPPMVVSMVAIGEETGSLDNMLGKVADFYDREVDEAVESLTAAIEPMMIVFLGGIVGLIVAGMFLPMFSI
IGALSQ

Nucleotide

• Length: 1221 bp

>NTDB_id=1094070 ACINK0_RS14065 WP_414657016.1 2775019..2776239(-) (pilC) [Deinococcus sp. VB343]
ATGCCGGTCTACGAATATCGCGCCCGGGACCGGGAGGGTAAGGTCCTGAAATCCCAGATGGACGCCGAGAGCGAAGCGCA
GGTTCGCGACGCCCTCCGCGCCCGCAACCTGATGATTCTCGAAATCAAGGCTCCCAAAACGGGCCTGAACGCCGACGTCA
AGATTCCGGGCCTGACCGACCGTCCCCCGGGTCTCAAGCAGGTGGCGGTCTTCAGCAAACAGCTCGCCACCCTGATCAAC
GCCGGTGTGCCGCTGGTGCAGTCGCTGGCGATTTTGCAGCGGCAGGTGGACAACAAGACCTTCGAGACGGTTCTCAAGAA
GGTGCGCGGTGACGTCGAGTCGGGTACACCTCTGAGTGAAGCCCTCCAGCAACACCCCAAAGTATTCAGTCGCCTTTTTA
TCAACCTCGTCCGCGCCGGCGAAACGAGCGGAACGCTGGACACGGTCCTTGAACGCATCGCCGATTTTCAGGAGAAGCAG
CTCGCCTTGCAGGGCAAAATCAAGAGCGCCCTGACCTACCCGGTGGTCGTGCTGGTGTTCGCGCTCGGCATCACCTACTT
CCTGCTGACCACCATCGTGCCGCAGTTCGCGAGCATCCTGACGCAGCTCAACGCACCTCTGCCCTTCATCACGCGCATGC
TGATGGCGGTGTCGGACTTCCTGCGCTCGTCGGGCCTGTTTATTTTCCTCATTGTCGGCGTCATCTTCTTCGCCTACCGC
TGGTACTACCGCACGCCCAAGGGCCGCTATGTCATTGACGACATCAAGCTCCGGCTGCCGGTGTTCGGCAACCTGATCCA
GAAGAGCGCCATCAGTTCCTTTGCCCGCACCTTCGGCCTGCTCATCAGCAGCGGCGTGAACATCATCGAATCGCTGGAAA
TCACTAAGGGTACCGCCAACAACGCGATTGTCGAGGAAACCATCGACAACGCCAAGAACGTGGTCATCTCCGGTGATCAG
ATGAGTTCGAGCTTGGCGACCAGCAAGGTCTTTCCGCCGATGGTGGTCAGCATGGTCGCCATCGGGGAAGAAACCGGTTC
GCTCGACAACATGCTGGGCAAAGTGGCCGACTTCTACGACCGCGAGGTGGACGAAGCCGTCGAGTCGCTGACCGCCGCCA
TCGAACCCATGATGATCGTGTTTCTCGGCGGTATCGTCGGCCTTATCGTGGCCGGGATGTTCCTCCCCATGTTCAGCATC
ATCGGCGCGCTCAGCCAGTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (274-396)

• Type II secretion system (T2SS), protein F (T2SSF) (71-194)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Thermus thermophilus HB27	61.576	100	0.616