Detailed information    

insolico Bioinformatically predicted

Overview

Name   ddrB   Type   Machinery gene
Locus tag   ACINK0_RS07000 Genome accession   NZ_CP179945
Coordinates   1347402..1347950 (+) Length   182 a.a.
NCBI ID   WP_303100806.1    Uniprot ID   -
Organism   Deinococcus sp. VB343     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1342402..1352950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACINK0_RS06970 (ACINK0_06970) - 1342510..1343463 (-) 954 WP_339097192.1 ABC transporter substrate-binding protein -
  ACINK0_RS06975 (ACINK0_06975) - 1343611..1344504 (+) 894 WP_414657665.1 hypothetical protein -
  ACINK0_RS06980 (ACINK0_06980) - 1344761..1345528 (-) 768 WP_414657666.1 APH(3') family aminoglycoside O-phosphotransferase -
  ACINK0_RS06985 (ACINK0_06985) - 1345593..1346498 (+) 906 WP_414657667.1 hypothetical protein -
  ACINK0_RS06990 (ACINK0_06990) - 1346495..1346860 (+) 366 WP_339097184.1 hypothetical protein -
  ACINK0_RS06995 (ACINK0_06995) - 1346924..1347280 (+) 357 WP_339097182.1 hypothetical protein -
  ACINK0_RS07000 (ACINK0_07000) ddrB 1347402..1347950 (+) 549 WP_303100806.1 single-stranded DNA-binding protein DdrB Machinery gene
  ACINK0_RS07005 (ACINK0_07005) - 1348079..1348525 (-) 447 WP_414657668.1 hypothetical protein -
  ACINK0_RS07010 (ACINK0_07010) - 1348615..1348770 (+) 156 WP_303100808.1 hypothetical protein -
  ACINK0_RS07015 (ACINK0_07015) - 1348861..1349355 (-) 495 WP_414657669.1 hypothetical protein -
  ACINK0_RS07020 (ACINK0_07020) - 1349428..1350003 (-) 576 WP_414657670.1 hypothetical protein -
  ACINK0_RS07025 (ACINK0_07025) - 1350107..1351339 (-) 1233 WP_339097173.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  ACINK0_RS07030 (ACINK0_07030) trmH 1351376..1352050 (-) 675 WP_414657671.1 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH -
  ACINK0_RS07035 (ACINK0_07035) - 1352283..1352429 (+) 147 WP_339097171.1 hypothetical protein -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20194.69 Da        Isoelectric Point: 9.6038

>NTDB_id=1094057 ACINK0_RS07000 WP_303100806.1 1347402..1347950(+) (ddrB) [Deinococcus sp. VB343]
MLHIEFLTDLGARVTVSVEHESKLLDVQRHYGRLGWTSGEIPAGGYQFPLENEADFDWSLIGARKWKSPEGEELVIHRGH
AYRRRELEAVDSRKLKLPAAIKYSRGAKVSDPPHVREKADGDIEYVSLAIFRGGKRQERYAVPGGAARPAGQGQSGQGQP
AAQPRPQQARPARPQPEPDAPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=1094057 ACINK0_RS07000 WP_303100806.1 1347402..1347950(+) (ddrB) [Deinococcus sp. VB343]
ATGCTACACATCGAATTTCTGACAGACCTCGGAGCGCGGGTGACGGTGAGCGTGGAGCACGAAAGCAAGCTGCTGGACGT
GCAGCGCCACTACGGGCGGCTGGGCTGGACCAGCGGCGAGATTCCGGCGGGGGGCTACCAGTTCCCGCTGGAAAACGAGG
CCGACTTCGACTGGTCACTGATCGGGGCACGCAAGTGGAAAAGCCCGGAAGGCGAAGAACTGGTCATTCACCGGGGTCAC
GCCTACCGCCGCCGCGAACTTGAGGCCGTAGACAGCCGCAAGCTCAAGCTGCCTGCCGCCATCAAGTACAGCCGGGGCGC
CAAGGTCAGCGACCCACCCCACGTGCGCGAAAAGGCCGACGGCGACATCGAATATGTCAGCCTCGCCATCTTCCGGGGGG
GCAAGCGGCAAGAGCGCTACGCCGTGCCTGGGGGGGCGGCGCGTCCGGCGGGGCAGGGTCAGTCTGGTCAGGGTCAGCCA
GCGGCACAGCCCCGGCCCCAGCAGGCACGGCCCGCCCGTCCCCAGCCCGAACCCGACGCGCCGTTCTAA

Domains

Predicted by InterproScan.

DdrB-like protein (DdrB)

(3-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ddrB Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

88.235

93.407

0.824

Multiple sequence alignment