Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   ACINK0_RS02895 Genome accession   NZ_CP179945
Coordinates   540145..540645 (+) Length   166 a.a.
NCBI ID   WP_414657285.1    Uniprot ID   -
Organism   Deinococcus sp. VB343     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 534010..544460 540145..540645 within 0


Gene organization within MGE regions


Location: 534010..544460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACINK0_RS02865 (ACINK0_02865) - 534010..534507 (+) 498 WP_339093802.1 winged helix-turn-helix domain-containing protein -
  ACINK0_RS02870 (ACINK0_02870) - 534507..535070 (+) 564 WP_339093800.1 IS630 family transposase -
  ACINK0_RS02875 (ACINK0_02875) - 535083..535751 (-) 669 WP_414657281.1 hypothetical protein -
  ACINK0_RS02880 (ACINK0_02880) - 535748..536410 (-) 663 WP_414657282.1 thiamine diphosphokinase -
  ACINK0_RS02885 (ACINK0_02885) - 536485..537171 (-) 687 WP_414657283.1 NUDIX domain-containing protein -
  ACINK0_RS02890 (ACINK0_02890) dnaB 537171..539762 (-) 2592 WP_414657284.1 replicative DNA helicase -
  ACINK0_RS02895 (ACINK0_02895) pilV 540145..540645 (+) 501 WP_414657285.1 type IV pilin protein Machinery gene
  ACINK0_RS02900 (ACINK0_02900) - 540701..541078 (+) 378 WP_414657286.1 type IV pilin protein -
  ACINK0_RS02905 (ACINK0_02905) - 541062..541325 (-) 264 WP_339095079.1 hypothetical protein -
  ACINK0_RS02910 (ACINK0_02910) - 541322..542089 (-) 768 WP_414657287.1 sulfite exporter TauE/SafE family protein -
  ACINK0_RS02915 (ACINK0_02915) - 542134..542817 (-) 684 WP_303103375.1 SDR family oxidoreductase -
  ACINK0_RS02920 (ACINK0_02920) - 542924..543661 (+) 738 WP_414657288.1 DUF72 domain-containing protein -
  ACINK0_RS02925 (ACINK0_02925) - 543698..543970 (+) 273 WP_414657289.1 hypothetical protein -
  ACINK0_RS02930 (ACINK0_02930) - 543999..544460 (-) 462 WP_414657290.1 hypothetical protein -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 16121.01 Da        Isoelectric Point: 7.5894

>NTDB_id=1094051 ACINK0_RS02895 WP_414657285.1 540145..540645(+) (pilV) [Deinococcus sp. VB343]
MKNGTQGFTLIELLIVIAIIGILAAVLIPNLLGARAKANDSATQSYIRNCYTAVEVARTADGRLPAAGNCNGDALGDNKV
TTPGAVKSDAIGAYTLDATGSKFAVAATSVTGKQFCFDGAKMGEGTGANGVCTFSTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGN

Nucleotide


Download         Length: 501 bp        

>NTDB_id=1094051 ACINK0_RS02895 WP_414657285.1 540145..540645(+) (pilV) [Deinococcus sp. VB343]
ATGAAGAACGGAACCCAAGGCTTCACCCTCATCGAGCTGCTCATCGTCATCGCCATCATCGGCATCCTGGCCGCCGTGCT
CATCCCCAACCTGCTCGGTGCCCGCGCCAAGGCCAACGACAGCGCCACCCAGAGCTACATCCGCAACTGCTACACCGCCG
TGGAAGTGGCCCGCACTGCTGATGGCCGTCTGCCTGCTGCTGGCAACTGCAATGGTGATGCTCTCGGTGATAACAAGGTC
ACGACTCCTGGCGCTGTTAAGTCTGATGCTATCGGTGCCTACACCCTTGATGCCACTGGCAGCAAGTTCGCTGTGGCTGC
CACGAGTGTGACTGGTAAGCAGTTCTGCTTCGACGGCGCGAAGATGGGCGAAGGCACTGGTGCTAATGGCGTCTGCACCT
TCAGCACTGGCACCGGCACCGGCACTGGCACCGGCACCGGCACCGGCACTGGCACCGGCACTGGCACCGGCACCGGCACC
GGCACCGGCACCGGCAACTAA

Domains

Predicted by InterproScan.

Pilin A4 (PilA4)

(39-125)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

84.444

81.325

0.687

Multiple sequence alignment