Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACMF5E_RS13665 Genome accession   NZ_CP179910
Coordinates   2802443..2803048 (-) Length   201 a.a.
NCBI ID   WP_414162309.1    Uniprot ID   -
Organism   Salmonella enterica subsp. enterica serovar Strathcona strain N22-0456     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2797443..2808048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMF5E_RS13650 (ACMF5E_13650) helD 2797660..2799714 (-) 2055 WP_080193326.1 DNA helicase IV -
  ACMF5E_RS13655 (ACMF5E_13655) - 2799838..2800284 (+) 447 WP_001261222.1 YccF domain-containing protein -
  ACMF5E_RS13660 (ACMF5E_13660) yccS 2800303..2802456 (+) 2154 WP_000950876.1 YccS family putative transporter -
  ACMF5E_RS13665 (ACMF5E_13665) sxy/tfoX 2802443..2803048 (-) 606 WP_414162309.1 TfoX/Sxy family DNA transformation protein Regulator
  ACMF5E_RS13670 (ACMF5E_13670) sulA 2803265..2803774 (+) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  ACMF5E_RS13675 (ACMF5E_13675) ompA 2804131..2805183 (+) 1053 WP_001670727.1 porin OmpA -
  ACMF5E_RS13680 (ACMF5E_13680) matP 2805255..2805707 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  ACMF5E_RS13685 (ACMF5E_13685) - 2805893..2807653 (+) 1761 WP_000156457.1 AAA family ATPase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23205.03 Da        Isoelectric Point: 8.7403

>NTDB_id=1093826 ACMF5E_RS13665 WP_414162309.1 2802443..2803048(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Strathcona strain N22-0456]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLMAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=1093826 ACMF5E_RS13665 WP_414162309.1 2802443..2803048(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Strathcona strain N22-0456]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTATGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.758

98.507

0.746

Multiple sequence alignment