Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ACMGG8_RS25690 Genome accession   NZ_CP179909
Coordinates   5691521..5692156 (-) Length   211 a.a.
NCBI ID   WP_016968261.1    Uniprot ID   A0AAD1B7L4
Organism   Pseudomonas sp. BNK-45     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5686521..5697156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMGG8_RS25655 (ACMGG8_25655) - 5686914..5687384 (-) 471 WP_016968267.1 (2Fe-2S)-binding protein -
  ACMGG8_RS25660 (ACMGG8_25660) murB 5687636..5688655 (-) 1020 WP_060838231.1 UDP-N-acetylmuramate dehydrogenase -
  ACMGG8_RS25665 (ACMGG8_25665) - 5688652..5689116 (-) 465 WP_060842854.1 low molecular weight protein-tyrosine-phosphatase -
  ACMGG8_RS25670 (ACMGG8_25670) kdsB 5689116..5689880 (-) 765 WP_060842853.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACMGG8_RS25675 (ACMGG8_25675) - 5689877..5690062 (-) 186 WP_011060103.1 Trm112 family protein -
  ACMGG8_RS25680 (ACMGG8_25680) lpxK 5690086..5691096 (-) 1011 WP_414158682.1 tetraacyldisaccharide 4'-kinase -
  ACMGG8_RS25685 (ACMGG8_25685) - 5691096..5691524 (-) 429 WP_060842852.1 ExbD/TolR family protein -
  ACMGG8_RS25690 (ACMGG8_25690) exbB 5691521..5692156 (-) 636 WP_016968261.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ACMGG8_RS25695 (ACMGG8_25695) comA 5692274..5694490 (-) 2217 WP_414158683.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACMGG8_RS25700 (ACMGG8_25700) - 5694630..5695145 (+) 516 WP_060838225.1 DUF2062 domain-containing protein -
  ACMGG8_RS25705 (ACMGG8_25705) - 5695199..5695978 (-) 780 WP_060838224.1 ABC transporter permease -
  ACMGG8_RS25710 (ACMGG8_25710) - 5695975..5696907 (-) 933 WP_060838223.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23019.19 Da        Isoelectric Point: 7.4247

>NTDB_id=1093808 ACMGG8_RS25690 WP_016968261.1 5691521..5692156(-) (exbB) [Pseudomonas sp. BNK-45]
MWELVKSGGWMMLPIILSSIAAVGIIAERLWTLRASRVTPPHLLGQVWRWIKDKQLNKEKLKELRADSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAHVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRVDELVVGMEQEAIKLVEVIQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1093808 ACMGG8_RS25690 WP_016968261.1 5691521..5692156(-) (exbB) [Pseudomonas sp. BNK-45]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCTGTGGGCATCATTGC
CGAGCGTTTGTGGACCCTGCGGGCCAGCCGGGTCACCCCGCCCCATCTGTTGGGTCAGGTCTGGCGCTGGATCAAGGACA
AGCAACTGAACAAGGAAAAGCTCAAGGAGCTGCGCGCCGATTCGCCCCTGGGGGAGATCCTGGCCGCGGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAATGCATTGAAGAGGCGGCAGCCCGCGTGATCCACGAGCTGGAGCGCTACCT
CAATGCCCTCGGCACCATCGCCGCCATGGCCCCGCTGCTGGGCCTCTTGGGCACGGTGCTGGGCATGATCGACATCTTCA
GTTCGTTCATGGGCTCGGGCATGACCACCAACGCCCACGTGCTGGCCGGCGGTATTTCCAAGGCCTTGATCACCACTGCC
GCGGGCCTGATGGTGGGGATTCCTTCGGTGTTCTTCCACCGCTTCCTGCAACGTCGGGTCGATGAGCTGGTGGTGGGCAT
GGAACAGGAGGCGATCAAGCTGGTGGAAGTGATCCAGGGTGACCGCGATGTCGACCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

87.678

100

0.877

Multiple sequence alignment