Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACMGGG_RS19970 Genome accession   NZ_CP179908
Coordinates   4357529..4358896 (-) Length   455 a.a.
NCBI ID   WP_414154268.1    Uniprot ID   -
Organism   Pseudomonas sp. BNK-44-b     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4352529..4363896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMGGG_RS19955 (ACMGGG_19955) - 4352891..4355560 (-) 2670 WP_414155827.1 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor -
  ACMGGG_RS19960 (ACMGGG_19960) - 4355895..4356884 (-) 990 WP_414154267.1 FecR family protein -
  ACMGGG_RS19965 (ACMGGG_19965) - 4356953..4357456 (-) 504 WP_063546141.1 RNA polymerase sigma factor -
  ACMGGG_RS19970 (ACMGGG_19970) radA 4357529..4358896 (-) 1368 WP_414154268.1 DNA repair protein RadA Machinery gene
  ACMGGG_RS19975 (ACMGGG_19975) mscL 4359076..4359489 (+) 414 WP_054894040.1 large-conductance mechanosensitive channel protein MscL -
  ACMGGG_RS19980 (ACMGGG_19980) - 4359532..4360308 (-) 777 WP_414154269.1 ferredoxin--NADP reductase -
  ACMGGG_RS19985 (ACMGGG_19985) - 4360513..4361226 (+) 714 WP_414154270.1 autoinducer binding domain-containing protein -
  ACMGGG_RS19990 (ACMGGG_19990) - 4361318..4362442 (+) 1125 WP_414154271.1 methyltransferase -
  ACMGGG_RS19995 (ACMGGG_19995) - 4362992..4363237 (+) 246 WP_054894036.1 DUF3077 domain-containing protein -
  ACMGGG_RS20000 (ACMGGG_20000) - 4363406..4363546 (-) 141 WP_063546145.1 DUF2474 domain-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48753.19 Da        Isoelectric Point: 6.8985

>NTDB_id=1093779 ACMGGG_RS19970 WP_414154268.1 4357529..4358896(-) (radA) [Pseudomonas sp. BNK-44-b]
MAKAKRLYGCTECGATFPKWAGQCGECGAWNTLVETMIESGGAAAPSGRAGWTGQQAQIKTLAEVSVEEIPRFTTSSTEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIATQMPALYVTGEESQQQVAMRSRRLGLPQDQLKVMTETCIETIIA
TARVEKPRVMVIDSIQTIFTEQLQSAPGGVAQVRESTALLVRYAKQSGTAIFLVGHVTKEGSLAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLNRTQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALLAAVMSSLRNRPLAHGLLVFGEIGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEPPAGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=1093779 ACMGGG_RS19970 WP_414154268.1 4357529..4358896(-) (radA) [Pseudomonas sp. BNK-44-b]
ATGGCCAAGGCCAAGCGCTTGTATGGCTGCACCGAGTGCGGCGCGACCTTTCCCAAATGGGCCGGCCAGTGTGGCGAATG
CGGCGCCTGGAACACCCTGGTCGAGACCATGATCGAAAGCGGCGGCGCTGCAGCGCCTTCCGGGCGTGCGGGCTGGACCG
GGCAGCAGGCGCAGATCAAGACCCTGGCCGAGGTGAGTGTCGAGGAGATCCCGCGCTTCACCACCAGCAGCACCGAGCTT
GACCGTGTGCTTGGCGGCGGCCTGGTCGATGGTTCGGTGGTGCTGATTGGCGGTGACCCAGGTATCGGCAAGTCCACCAT
CCTGCTGCAGACCCTGTGCAACATCGCCACGCAGATGCCTGCGCTGTATGTCACCGGCGAGGAGTCGCAGCAGCAGGTGG
CCATGCGTTCGCGGCGCCTGGGCCTGCCCCAGGACCAGCTCAAGGTGATGACCGAAACCTGCATCGAAACCATCATCGCC
ACGGCGCGGGTGGAAAAGCCGCGGGTGATGGTGATCGACTCGATCCAGACCATCTTCACCGAACAGCTGCAATCGGCTCC
CGGTGGCGTGGCCCAGGTGCGCGAGAGCACGGCGCTGCTGGTGCGTTACGCCAAGCAGAGCGGCACGGCGATCTTCCTGG
TTGGCCACGTGACCAAGGAGGGCTCGCTGGCAGGCCCGCGGGTACTCGAGCACATGGTCGACACCGTGCTGTATTTCGAG
GGCGAATCGGACGGACGCCTGCGCCTGCTGCGAGCGGTGAAGAACCGTTTCGGCGCGGTCAACGAGCTGGGTGTGTTCGG
CATGACCGACCGTGGCCTGAAGGAGGTCTCCAACCCTTCGGCGATCTTCCTCAACCGCACCCAGGAAGAGGTGCCGGGCA
GCGTGGTGATGGCCACCTGGGAGGGCACCCGGCCGATGCTGGTCGAGGTGCAGGCGCTGGTCGACGACAGCCACCTGGCC
AACCCGCGGCGGGTCACCCTGGGCCTGGACCAGAACCGCCTGGCGATGTTGCTGGCGGTGTTGCACCGCCACGGCGGCAT
TCCCACCCATGACCAGGACGTGTTCCTCAACGTGGTCGGCGGGGTCAAGGTGCTCGAGACCGCCTCCGACCTGGCGCTGC
TCGCAGCGGTAATGTCGAGCCTGCGCAACCGCCCATTGGCCCATGGCCTGCTGGTGTTCGGCGAGATCGGTCTTTCTGGC
GAGGTGCGTCCGGTGCCCAGCGGCCAGGAGCGCCTGAAGGAGGCGGCCAAGCATGGCTTCAAGCGCGCCATCGTGCCCAA
GGGCAACGCCCCCAAGGAACCGCCAGCAGGCTTGCAGGTGATTGCGGTGACGCGTCTGGAGCAGGCCCTGGACGCACTGT
TCGAGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(354-429)

AAA domain (AAA_25)

(73-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.684

100

0.488
  radA Streptococcus pneumoniae Rx1

46.187

100

0.466
  radA Streptococcus pneumoniae R6

46.187

100

0.466
  radA Streptococcus pneumoniae TIGR4

46.187

100

0.466
  radA Streptococcus pneumoniae D39

46.187

100

0.466
  radA Streptococcus mitis SK321

46.374

100

0.464
  radA Streptococcus mitis NCTC 12261

46.154

100

0.462

Multiple sequence alignment