Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ACMGGY_RS23240 Genome accession   NZ_CP179907
Coordinates   5056824..5057459 (+) Length   211 a.a.
NCBI ID   WP_054893125.1    Uniprot ID   A0AAD0PE55
Organism   Pseudomonas sp. BNK-44-a     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5051824..5062459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMGGY_RS23220 (ACMGGY_23220) - 5052130..5053062 (+) 933 WP_414155034.1 ABC transporter ATP-binding protein -
  ACMGGY_RS23225 (ACMGGY_23225) - 5053059..5053838 (+) 780 WP_054893055.1 ABC transporter permease -
  ACMGGY_RS23230 (ACMGGY_23230) - 5053722..5054348 (-) 627 WP_151924181.1 DUF2062 domain-containing protein -
  ACMGGY_RS23235 (ACMGGY_23235) comA 5054491..5056713 (+) 2223 WP_414155035.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACMGGY_RS23240 (ACMGGY_23240) exbB 5056824..5057459 (+) 636 WP_054893125.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ACMGGY_RS23245 (ACMGGY_23245) - 5057456..5057890 (+) 435 WP_414155931.1 ExbD/TolR family protein -
  ACMGGY_RS23250 (ACMGGY_23250) lpxK 5057890..5058886 (+) 997 Protein_4573 tetraacyldisaccharide 4'-kinase -
  ACMGGY_RS23255 (ACMGGY_23255) - 5058928..5059113 (+) 186 WP_054893060.1 Trm112 family protein -
  ACMGGY_RS23260 (ACMGGY_23260) kdsB 5059110..5059874 (+) 765 WP_414155036.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACMGGY_RS23265 (ACMGGY_23265) - 5059874..5060338 (+) 465 WP_323453847.1 low molecular weight protein-tyrosine-phosphatase -
  ACMGGY_RS23270 (ACMGGY_23270) murB 5060335..5061354 (+) 1020 WP_112897749.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22831.12 Da        Isoelectric Point: 7.3616

>NTDB_id=1093761 ACMGGY_RS23240 WP_054893125.1 5056824..5057459(+) (exbB) [Pseudomonas sp. BNK-44-a]
MWELVKSGGWMMLPIILSSVAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVLQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1093761 ACMGGY_RS23240 WP_054893125.1 5056824..5057459(+) (exbB) [Pseudomonas sp. BNK-44-a]
GTGTGGGAATTGGTCAAGTCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGCTCCGTCGCAGCCATGGCAATTGTCGT
CGAGCGCCTGTGGACCCTGCGTGCCAGTCGCGTCACCCCGCCGCACCTGCTGGGCCAGGTATGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCCTTGCGCGCCGACTCCCCCTTGGGCGAGATTCTCGCCGCGGGCCTGGCAAAC
TCTCGCCATGGCCGCGAGATCATGAAGGAATGCATCGAGGAGGCCGCCTCCCGGGTCATCCACGAGCTCGAGCGCTACAT
CAGCACGCTGGGCACCATCGCTGCAATGGCGCCGTTGCTCGGTCTGCTTGGCACCGTACTTGGCATGATCGACATCTTCA
GTGCGTTCATGGGCTCGCAGATGACTGCCAACGCCGCGGTGCTCGCCGGGGGTATTTCCAAGGCGCTGGTGACCACCGCA
GCGGGCCTGATGGTTGGTATCCCCGCCGTATTCTTCCACCGTTTCCTGCTGCGCCGCATCGATGAGCTGGTGGTTGGCAT
GGAGCAGGAGGCGATCAAGCTGGTCGAGGTGCTGCAGGGCGATCGCGAGGTCGAGGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.464

100

0.825

Multiple sequence alignment