Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACMGF5_RS12830 Genome accession   NZ_CP179898
Coordinates   2818362..2819729 (+) Length   455 a.a.
NCBI ID   WP_042111159.1    Uniprot ID   A0A379KHQ5
Organism   Pseudomonas sp. BNK-15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2813362..2824729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMGF5_RS12800 (ACMGF5_12800) cydB 2813583..2814590 (+) 1008 WP_012312717.1 cytochrome d ubiquinol oxidase subunit II -
  ACMGF5_RS12805 (ACMGF5_12805) - 2814599..2814754 (+) 156 WP_080765861.1 DUF2474 domain-containing protein -
  ACMGF5_RS12810 (ACMGF5_12810) - 2814787..2815911 (-) 1125 WP_414157837.1 methyltransferase -
  ACMGF5_RS12815 (ACMGF5_12815) - 2816004..2816714 (-) 711 WP_237860172.1 autoinducer binding domain-containing protein -
  ACMGF5_RS12820 (ACMGF5_12820) - 2816927..2817703 (+) 777 WP_115273571.1 ferredoxin--NADP reductase -
  ACMGF5_RS12825 (ACMGF5_12825) mscL 2817766..2818185 (-) 420 WP_012312722.1 large-conductance mechanosensitive channel protein MscL -
  ACMGF5_RS12830 (ACMGF5_12830) radA 2818362..2819729 (+) 1368 WP_042111159.1 DNA repair protein RadA Machinery gene
  ACMGF5_RS12835 (ACMGF5_12835) - 2819826..2821343 (-) 1518 WP_046784717.1 nucleobase:cation symporter-2 family protein -
  ACMGF5_RS12840 (ACMGF5_12840) - 2821607..2821972 (-) 366 WP_046784718.1 PilZ domain-containing protein -
  ACMGF5_RS12845 (ACMGF5_12845) - 2822076..2822357 (-) 282 WP_231386145.1 lytic polysaccharide monooxygenase -
  ACMGF5_RS12850 (ACMGF5_12850) - 2822606..2824672 (+) 2067 WP_119688274.1 carbon starvation CstA family protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48639.04 Da        Isoelectric Point: 6.8985

>NTDB_id=1093553 ACMGF5_RS12830 WP_042111159.1 2818362..2819729(+) (radA) [Pseudomonas sp. BNK-15]
MAKAKRLYGCTECGATFPKWAGQCGECGAWNTLVETMIESGGAAAPSGRAGWTGQQAQIKTLAEVSVEEIPRFTTSSTEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIAVGMPALYVTGEESQQQVAMRSRRLGLPQDQLKVMTETCIETIIA
TARQEKPRVMVIDSIQTIFTEQLQSAPGGVAQVRESAALLVRYAKQSGTAIFLVGHVTKEGSLAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLNRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALLAAVMSSLRNRPLAHGLLVFGEIGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKESPAGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=1093553 ACMGF5_RS12830 WP_042111159.1 2818362..2819729(+) (radA) [Pseudomonas sp. BNK-15]
ATGGCCAAGGCCAAGCGCTTGTATGGCTGCACCGAGTGCGGCGCTACCTTTCCCAAATGGGCCGGCCAGTGTGGCGAATG
CGGGGCGTGGAACACCCTGGTCGAAACCATGATCGAGAGCGGCGGTGCGGCGGCACCCAGCGGTCGCGCCGGCTGGACCG
GGCAACAGGCGCAGATCAAGACCCTGGCCGAAGTCAGCGTCGAGGAGATTCCGCGGTTCACCACCAGCAGCACCGAACTC
GATCGTGTGCTGGGCGGCGGCCTGGTCGACGGTTCGGTGGTGTTGATCGGCGGTGACCCGGGCATCGGCAAATCGACCAT
TCTGCTGCAGACCTTGTGCAATATCGCCGTGGGCATGCCGGCGCTGTATGTCACCGGCGAAGAGTCGCAGCAGCAGGTGG
CCATGCGCTCACGCCGCCTGGGGCTGCCCCAGGACCAGCTCAAAGTGATGACCGAGACCTGTATCGAAACGATCATTGCC
ACCGCGCGCCAGGAAAAGCCCCGGGTCATGGTCATCGATTCGATCCAGACCATCTTCACCGAGCAATTGCAATCAGCGCC
CGGCGGTGTCGCCCAGGTGCGCGAAAGTGCGGCATTGCTGGTGCGCTACGCCAAGCAGAGTGGCACGGCGATCTTCTTGG
TCGGCCATGTCACCAAGGAAGGCTCGCTGGCAGGCCCGCGGGTGCTGGAGCACATGGTCGACACCGTGTTGTATTTCGAG
GGCGAGTCCGATGGCCGCTTGCGCTTGCTGCGCGCGGTGAAGAACCGCTTCGGTGCGGTCAATGAACTGGGGGTCTTCGG
TATGACCGACCGTGGGCTCAAAGAGGTTTCCAACCCATCGGCGATCTTCCTCAACCGGGCTCAGGAAGAAGTACCGGGCA
GCGTGGTCATGGCCACGTGGGAAGGTACCCGGCCGATGCTGGTAGAGGTACAGGCACTGGTCGATGACAGCCACCTGGCC
AACCCGCGGCGTGTCACCCTGGGCCTGGACCAGAACCGGCTGGCCATGTTGCTGGCGGTGCTGCACCGCCATGGTGGTAT
TCCCACCCATGACCAGGACGTGTTTCTCAATGTCGTCGGCGGGGTGAAGGTCCTTGAAACCGCGTCGGACCTGGCCTTGT
TGGCTGCGGTGATGTCCAGCCTGCGCAACCGGCCATTGGCCCACGGGCTGCTGGTATTTGGCGAGATTGGTTTGTCGGGC
GAGGTGCGGCCGGTTCCCAGTGGCCAGGAGCGCCTCAAAGAAGCGGCAAAACATGGCTTCAAGCGGGCCATCGTGCCCAA
GGGCAACGCACCGAAGGAATCACCGGCGGGGTTGCAGGTGATCGCCGTAACCCGGCTGGAACAGGCTCTGGACGCCTTGT
TCGAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(72-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(354-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A379KHQ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.465

100

0.486
  radA Streptococcus pneumoniae Rx1

45.934

100

0.459
  radA Streptococcus pneumoniae D39

45.934

100

0.459
  radA Streptococcus pneumoniae R6

45.934

100

0.459
  radA Streptococcus pneumoniae TIGR4

45.934

100

0.459
  radA Streptococcus mitis SK321

45.934

100

0.459
  radA Streptococcus mitis NCTC 12261

45.714

100

0.457

Multiple sequence alignment