Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   ACK8DC_RS01370 Genome accession   NZ_CP179883
Coordinates   290360..290674 (+) Length   104 a.a.
NCBI ID   WP_031968380.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain MRSN15091     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 289266..290356 290360..290674 flank 4


Gene organization within MGE regions


Location: 289266..290674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK8DC_RS01365 (ACK8DC_01365) - 289266..290356 (+) 1091 WP_085940648.1 IS4-like element ISAba1 family transposase -
  ACK8DC_RS01370 (ACK8DC_01370) hns 290360..290674 (+) 315 WP_031968380.1 H-NS family nucleoid-associated regulatory protein Regulator

Sequence

Protein


Download         Length: 104 a.a.        Molecular weight: 12012.59 Da        Isoelectric Point: 5.0362

>NTDB_id=1093383 ACK8DC_RS01370 WP_031968380.1 290360..290674(+) (hns) [Acinetobacter baumannii strain MRSN15091]
MSCTEVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAEETWT
GRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 315 bp        

>NTDB_id=1093383 ACK8DC_RS01370 WP_031968380.1 290360..290674(+) (hns) [Acinetobacter baumannii strain MRSN15091]
TTGTCGTGTACAGAGGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAAAAAAGATCAAGC
AATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTTAGTGTTGAACAACTTCTAGAATTTGGCG
CTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAAGAGACTTGGACG
GGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTTAATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(8-98)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

96.154

100

0.962

Multiple sequence alignment