Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   ACK8DD_RS17135 Genome accession   NZ_CP179880
Coordinates   3635878..3636204 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain MRSN548254     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3630878..3641204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK8DD_RS17115 (ACK8DD_17115) - 3630978..3631607 (-) 630 WP_004748515.1 FHA domain-containing protein -
  ACK8DD_RS17120 (ACK8DD_17120) gspD 3631648..3633924 (-) 2277 WP_004748516.1 type II secretion system secretin GspD -
  ACK8DD_RS17125 (ACK8DD_17125) - 3633966..3634802 (-) 837 WP_000870031.1 type II secretion system protein N -
  ACK8DD_RS17130 (ACK8DD_17130) gspN 3634802..3635545 (-) 744 WP_000730343.1 type II secretion system protein N -
  ACK8DD_RS17135 (ACK8DD_17135) hns 3635878..3636204 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  ACK8DD_RS17140 (ACK8DD_17140) - 3636399..3636839 (-) 441 WP_000661569.1 acyl-CoA thioesterase -
  ACK8DD_RS17145 (ACK8DD_17145) - 3636847..3638040 (-) 1194 WP_000681777.1 hypothetical protein -
  ACK8DD_RS17150 (ACK8DD_17150) - 3638050..3638889 (-) 840 WP_001230202.1 hypothetical protein -
  ACK8DD_RS17155 (ACK8DD_17155) - 3638898..3639665 (-) 768 WP_004748520.1 uroporphyrinogen-III synthase -
  ACK8DD_RS17160 (ACK8DD_17160) hemC 3639670..3640587 (-) 918 WP_002159654.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=1093368 ACK8DD_RS17135 WP_000801427.1 3635878..3636204(-) (hns) [Acinetobacter baumannii strain MRSN548254]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=1093368 ACK8DD_RS17135 WP_000801427.1 3635878..3636204(-) (hns) [Acinetobacter baumannii strain MRSN548254]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTTAGTGTTGAACAACTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACGGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1

Multiple sequence alignment