Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   ACK8DD_RS01625 Genome accession   NZ_CP179880
Coordinates   349441..349866 (+) Length   141 a.a.
NCBI ID   WP_005130737.1    Uniprot ID   A0AAX0TXJ3
Organism   Acinetobacter baumannii strain MRSN548254     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 344441..354866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK8DD_RS01615 (ACK8DD_01615) pilY1 345095..348949 (+) 3855 WP_023896142.1 PilC/PilY family type IV pilus protein Machinery gene
  ACK8DD_RS01620 (ACK8DD_01620) pilY2 348962..349444 (+) 483 WP_001046413.1 type IV pilin protein Machinery gene
  ACK8DD_RS01625 (ACK8DD_01625) pilE 349441..349866 (+) 426 WP_005130737.1 type IV pilin protein Machinery gene
  ACK8DD_RS01630 (ACK8DD_01630) rpsP 350013..350264 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  ACK8DD_RS01635 (ACK8DD_01635) rimM 350284..350832 (+) 549 WP_005130741.1 ribosome maturation factor RimM -
  ACK8DD_RS01640 (ACK8DD_01640) trmD 350878..351618 (+) 741 WP_000464599.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  ACK8DD_RS01645 (ACK8DD_01645) rplS 351826..352194 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  ACK8DD_RS01650 (ACK8DD_01650) - 352247..353188 (-) 942 WP_098713316.1 lipase family alpha/beta hydrolase -
  ACK8DD_RS01655 (ACK8DD_01655) - 353303..354337 (-) 1035 WP_046693070.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15191.34 Da        Isoelectric Point: 7.1291

>NTDB_id=1093341 ACK8DD_RS01625 WP_005130737.1 349441..349866(+) (pilE) [Acinetobacter baumannii strain MRSN548254]
MKNGFSLIEIMVVVAIVAILAAIATPSYLQYLHKGHRTAVQSEMMNIAQTLESQKMVNNRYPSNATIQSIYGSNVSPLQG
KALYTLAFTTLNDSTWVLTATPIANTSQAGDGIICLNDQGQKFWAKGATDCALSASSSWTE

Nucleotide


Download         Length: 426 bp        

>NTDB_id=1093341 ACK8DD_RS01625 WP_005130737.1 349441..349866(+) (pilE) [Acinetobacter baumannii strain MRSN548254]
GTGAAGAATGGTTTTTCTTTAATTGAAATTATGGTCGTGGTAGCAATAGTTGCAATTTTAGCGGCTATAGCCACCCCTTC
ATATTTACAATATTTGCATAAAGGACATCGTACTGCTGTTCAATCCGAAATGATGAATATTGCGCAGACTTTAGAGTCTC
AAAAAATGGTGAATAACCGTTATCCCTCAAATGCAACTATACAATCAATTTATGGCTCTAATGTGAGTCCTCTTCAGGGC
AAAGCTTTATATACTTTAGCTTTTACTACTTTAAACGATTCGACATGGGTGCTTACGGCAACACCAATCGCTAATACTTC
ACAAGCTGGTGATGGAATTATTTGCTTAAATGATCAAGGGCAAAAATTTTGGGCAAAAGGTGCTACAGATTGTGCACTAT
CGGCTTCATCAAGTTGGACAGAGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(26-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

97.163

100

0.972
  comF Acinetobacter baylyi ADP1

51.429

99.291

0.511

Multiple sequence alignment