Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   ACK8DB_RS01620 Genome accession   NZ_CP179875
Coordinates   345454..346272 (+) Length   272 a.a.
NCBI ID   WP_000149377.1    Uniprot ID   A0A009ITJ0
Organism   Acinetobacter baumannii strain MRSN548102     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 340454..351272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK8DB_RS01585 (ACK8DB_01585) - 341036..341166 (-) 131 Protein_303 hypothetical protein -
  ACK8DB_RS01590 (ACK8DB_01590) rpoZ 341205..341483 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  ACK8DB_RS01595 (ACK8DB_01595) gmk 341556..342185 (-) 630 WP_000015937.1 guanylate kinase -
  ACK8DB_RS01600 (ACK8DB_01600) ispH 342308..343258 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ACK8DB_RS01605 (ACK8DB_01605) fimU 343428..343901 (+) 474 WP_001214067.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ACK8DB_RS01610 (ACK8DB_01610) pilV 343895..344455 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  ACK8DB_RS01615 (ACK8DB_01615) pilW 344456..345457 (+) 1002 WP_000079192.1 PilW family protein Machinery gene
  ACK8DB_RS01620 (ACK8DB_01620) pilX 345454..346272 (+) 819 WP_000149377.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ACK8DB_RS01625 (ACK8DB_01625) pilY1 346284..350138 (+) 3855 WP_023896142.1 PilC/PilY family type IV pilus protein Machinery gene
  ACK8DB_RS01630 (ACK8DB_01630) pilY2 350151..350633 (+) 483 WP_001046413.1 type IV pilin protein Machinery gene
  ACK8DB_RS01635 (ACK8DB_01635) pilE 350630..351055 (+) 426 WP_005130737.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28858.70 Da        Isoelectric Point: 5.6905

>NTDB_id=1093291 ACK8DB_RS01620 WP_000149377.1 345454..346272(+) (pilX) [Acinetobacter baumannii strain MRSN548102]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMPDIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=1093291 ACK8DB_RS01620 WP_000149377.1 345454..346272(+) (pilX) [Acinetobacter baumannii strain MRSN548102]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGAGCAAGTTTGCTTCGAGCTGGCAGCGCCAATAATGCTGTAGTTGAAGACGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGCCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCATCAACCTCTTTAGAAACTT
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009ITJ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

98.897

100

0.989

Multiple sequence alignment