Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   ACK8DE_RS17705 Genome accession   NZ_CP179872
Coordinates   3660908..3661726 (-) Length   272 a.a.
NCBI ID   WP_000149377.1    Uniprot ID   A0A009ITJ0
Organism   Acinetobacter baumannii strain MRSN15116     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3655908..3666726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK8DE_RS17690 (ACK8DE_17690) pilE 3656125..3656550 (-) 426 WP_005130737.1 type IV pilin protein Machinery gene
  ACK8DE_RS17695 (ACK8DE_17695) pilY2 3656547..3657029 (-) 483 WP_001046413.1 type IV pilin protein Machinery gene
  ACK8DE_RS17700 (ACK8DE_17700) pilY1 3657042..3660896 (-) 3855 WP_023896142.1 PilC/PilY family type IV pilus protein Machinery gene
  ACK8DE_RS17705 (ACK8DE_17705) pilX 3660908..3661726 (-) 819 WP_000149377.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ACK8DE_RS17710 (ACK8DE_17710) pilW 3661723..3662724 (-) 1002 WP_000079192.1 PilW family protein Machinery gene
  ACK8DE_RS17715 (ACK8DE_17715) pilV 3662725..3663285 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  ACK8DE_RS17720 (ACK8DE_17720) fimU 3663279..3663752 (-) 474 WP_001214067.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ACK8DE_RS17725 (ACK8DE_17725) ispH 3663922..3664872 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ACK8DE_RS17730 (ACK8DE_17730) gmk 3664995..3665624 (+) 630 WP_000015937.1 guanylate kinase -
  ACK8DE_RS17735 (ACK8DE_17735) rpoZ 3665697..3665975 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  ACK8DE_RS17740 (ACK8DE_17740) - 3666014..3666144 (+) 131 Protein_3465 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28858.70 Da        Isoelectric Point: 5.6905

>NTDB_id=1093270 ACK8DE_RS17705 WP_000149377.1 3660908..3661726(-) (pilX) [Acinetobacter baumannii strain MRSN15116]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMPDIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=1093270 ACK8DE_RS17705 WP_000149377.1 3660908..3661726(-) (pilX) [Acinetobacter baumannii strain MRSN15116]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGAGCAAGTTTGCTTCGAGCTGGCAGCGCCAATAATGCTGTAGTTGAAGACGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGCCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCATCAACCTCTTTAGAAACTT
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009ITJ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

98.897

100

0.989

Multiple sequence alignment