Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   ACK8DE_RS16975 Genome accession   NZ_CP179872
Coordinates   3525952..3526836 (-) Length   294 a.a.
NCBI ID   WP_004745504.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain MRSN15116     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3520952..3531836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK8DE_RS16960 (ACK8DE_16960) miaB 3522799..3524250 (+) 1452 WP_000218141.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  ACK8DE_RS16965 (ACK8DE_16965) - 3524288..3525376 (+) 1089 WP_000122983.1 PhoH family protein -
  ACK8DE_RS16970 (ACK8DE_16970) ybeY 3525386..3525862 (+) 477 WP_004745506.1 rRNA maturation RNase YbeY -
  ACK8DE_RS16975 (ACK8DE_16975) tonB2 3525952..3526836 (-) 885 WP_004745504.1 energy transducer TonB Machinery gene
  ACK8DE_RS16980 (ACK8DE_16980) - 3527067..3527738 (+) 672 WP_001193958.1 hypothetical protein -
  ACK8DE_RS16985 (ACK8DE_16985) - 3527896..3528609 (+) 714 WP_000201544.1 DUF3108 domain-containing protein -
  ACK8DE_RS16990 (ACK8DE_16990) - 3528682..3529257 (+) 576 WP_000543071.1 xanthine phosphoribosyltransferase -
  ACK8DE_RS16995 (ACK8DE_16995) wrbA 3529310..3529903 (-) 594 WP_001183348.1 NAD(P)H:quinone oxidoreductase -
  ACK8DE_RS17000 (ACK8DE_17000) - 3530190..3531437 (+) 1248 WP_000893466.1 YihY family inner membrane protein -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33515.38 Da        Isoelectric Point: 9.0947

>NTDB_id=1093264 ACK8DE_RS16975 WP_004745504.1 3525952..3526836(-) (tonB2) [Acinetobacter baumannii strain MRSN15116]
MLKKRSLSIEPFYYWWQDRVFIAAIILAILLHIFVLLIHFAMPAPSEQSTKEIAISIHPAEDVIKHADFLAQADQQGSGA
FRAAHRMSSNSPAPMPSDASTGEAQLETLEKVQQQRELKFEEKVLMTVLSWQKQAEESQRKKALEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSGHPVLDEAAKASVRRGAPFGRFDANMKDISELRIIRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=1093264 ACK8DE_RS16975 WP_004745504.1 3525952..3526836(-) (tonB2) [Acinetobacter baumannii strain MRSN15116]
ATGTTGAAAAAAAGAAGTCTATCCATAGAGCCTTTTTATTATTGGTGGCAAGACCGAGTCTTTATCGCTGCAATAATATT
AGCAATCTTACTGCATATTTTTGTGTTGCTCATCCATTTTGCGATGCCTGCGCCGTCAGAACAATCGACTAAAGAAATTG
CAATATCGATTCATCCTGCTGAAGATGTAATCAAGCATGCAGACTTTTTAGCTCAAGCCGATCAACAAGGTTCAGGAGCT
TTTCGGGCAGCTCATCGGATGTCGAGTAACTCTCCAGCGCCTATGCCAAGTGATGCTTCAACAGGAGAAGCTCAGCTAGA
AACTTTAGAAAAAGTGCAGCAACAAAGAGAACTTAAATTTGAAGAAAAAGTACTCATGACTGTATTGAGTTGGCAGAAAC
AAGCAGAGGAGAGCCAAAGAAAAAAAGCACTTGAACAATTACAAAGTCAGTTTCAGGCAAAAGCTGCCATGGTAGCGAGT
CTTGAAGCTCAGTATTTACAACGTCAGCAAGATTTTAGTCGCCAACAAAAGATAAAAACAGTAGATGGTATTCAAGCCAA
GAAAGATGCGTCAGCAGCTTATCTAGATAAATTTCGTGAAAAAGTAGAGCTTTATGGCAACCGTTATTATCCAGAAGAAG
CGAAACAGCAACAGTTAAAAGGTGAAGTTCGCCTTATGGTAATTTTGAATGCTCAAGGGGGAATTCGTGCAATTCGTTTG
CTTGAAAGCTCAGGTCATCCAGTTCTAGATGAAGCAGCAAAGGCATCGGTACGGCGTGGAGCGCCGTTTGGCCGTTTTGA
TGCAAATATGAAAGATATTTCGGAACTTCGTATTATTCGTACATGGCGTTTTGATCCAGCTGAAGCTGAATTTGAAGTTC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

98.98

100

0.99

Multiple sequence alignment