Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   ACK8DA_RS17555 Genome accession   NZ_CP179869
Coordinates   3665343..3665984 (-) Length   213 a.a.
NCBI ID   WP_000201226.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain MRSN122172     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3660343..3670984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK8DA_RS17535 (ACK8DA_17535) aroK 3661259..3661828 (-) 570 WP_000643712.1 shikimate kinase AroK -
  ACK8DA_RS17540 (ACK8DA_17540) pilQ 3661840..3664005 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  ACK8DA_RS17545 (ACK8DA_17545) pilP 3664068..3664595 (-) 528 WP_024436689.1 pilus assembly protein PilP Machinery gene
  ACK8DA_RS17550 (ACK8DA_17550) pilO 3664606..3665346 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACK8DA_RS17555 (ACK8DA_17555) pilN 3665343..3665984 (-) 642 WP_000201226.1 PilN domain-containing protein Machinery gene
  ACK8DA_RS17560 (ACK8DA_17560) pilM 3665984..3667042 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  ACK8DA_RS17565 (ACK8DA_17565) ponA 3667203..3669758 (+) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  ACK8DA_RS17570 (ACK8DA_17570) - 3669776..3670600 (-) 825 WP_415858140.1 putative RNA methyltransferase -
  ACK8DA_RS17575 (ACK8DA_17575) - 3670603..3670935 (-) 333 WP_046693073.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23989.33 Da        Isoelectric Point: 5.3968

>NTDB_id=1093229 ACK8DA_RS17555 WP_000201226.1 3665343..3665984(-) (pilN) [Acinetobacter baumannii strain MRSN122172]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVATTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=1093229 ACK8DA_RS17555 WP_000201226.1 3665343..3665984(-) (pilN) [Acinetobacter baumannii strain MRSN122172]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGGCCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.531

100

0.995
  comN Acinetobacter baylyi ADP1

72.596

97.653

0.709

Multiple sequence alignment