Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   ACK8DA_RS17430 Genome accession   NZ_CP179869
Coordinates   3637746..3638219 (-) Length   157 a.a.
NCBI ID   WP_001214067.1    Uniprot ID   A0A7U3Y304
Organism   Acinetobacter baumannii strain MRSN122172     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3632746..3643219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK8DA_RS17415 (ACK8DA_17415) pilX 3635375..3636193 (-) 819 WP_000149377.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ACK8DA_RS17420 (ACK8DA_17420) pilW 3636190..3637191 (-) 1002 WP_000079192.1 PilW family protein Machinery gene
  ACK8DA_RS17425 (ACK8DA_17425) pilV 3637192..3637752 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  ACK8DA_RS17430 (ACK8DA_17430) fimU 3637746..3638219 (-) 474 WP_001214067.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ACK8DA_RS17435 (ACK8DA_17435) ispH 3638389..3639339 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ACK8DA_RS17440 (ACK8DA_17440) gmk 3639462..3640091 (+) 630 WP_000015937.1 guanylate kinase -
  ACK8DA_RS17445 (ACK8DA_17445) rpoZ 3640164..3640442 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  ACK8DA_RS17450 (ACK8DA_17450) - 3640481..3640611 (+) 131 Protein_3407 hypothetical protein -
  ACK8DA_RS17455 (ACK8DA_17455) - 3640651..3642756 (+) 2106 WP_001117590.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16823.40 Da        Isoelectric Point: 8.5355

>NTDB_id=1093224 ACK8DA_RS17430 WP_001214067.1 3637746..3638219(-) (fimU) [Acinetobacter baumannii strain MRSN122172]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDGNQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=1093224 ACK8DA_RS17430 WP_001214067.1 3637746..3638219(-) (fimU) [Acinetobacter baumannii strain MRSN122172]
ATGAGGGGAATTATTCCACAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCAGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGGTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U3Y304

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

99.363

100

0.994

Multiple sequence alignment