Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   ACK8DA_RS16695 Genome accession   NZ_CP179869
Coordinates   3501279..3502163 (-) Length   294 a.a.
NCBI ID   WP_415858137.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain MRSN122172     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3496279..3507163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK8DA_RS16680 (ACK8DA_16680) miaB 3498126..3499577 (+) 1452 WP_000218141.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  ACK8DA_RS16685 (ACK8DA_16685) - 3499615..3500703 (+) 1089 WP_000122983.1 PhoH family protein -
  ACK8DA_RS16690 (ACK8DA_16690) ybeY 3500713..3501189 (+) 477 WP_004745506.1 rRNA maturation RNase YbeY -
  ACK8DA_RS16695 (ACK8DA_16695) tonB2 3501279..3502163 (-) 885 WP_415858137.1 energy transducer TonB Machinery gene
  ACK8DA_RS16700 (ACK8DA_16700) - 3502394..3503065 (+) 672 WP_001193958.1 hypothetical protein -
  ACK8DA_RS16705 (ACK8DA_16705) - 3503223..3503936 (+) 714 WP_000201544.1 DUF3108 domain-containing protein -
  ACK8DA_RS16710 (ACK8DA_16710) - 3504009..3504584 (+) 576 WP_000543071.1 xanthine phosphoribosyltransferase -
  ACK8DA_RS16715 (ACK8DA_16715) wrbA 3504637..3505230 (-) 594 WP_001183348.1 NAD(P)H:quinone oxidoreductase -
  ACK8DA_RS16720 (ACK8DA_16720) - 3505517..3506764 (+) 1248 WP_000893466.1 YihY family inner membrane protein -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33543.43 Da        Isoelectric Point: 9.0947

>NTDB_id=1093215 ACK8DA_RS16695 WP_415858137.1 3501279..3502163(-) (tonB2) [Acinetobacter baumannii strain MRSN122172]
MLKKRSLSIEPFYYWWQDRVFIAAIILAILLHIFVLLIHFAMPAPSEQSTKEIAISIHPAEDVIKHADFLAQADQQGSGA
FRAAHRMSSNSPAPMPSDASTGEAQLETLEKVQQQRELKFEEKVLMTVLSWQKQAEESQRKKALEQLQSQFQVKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSGHPVLDEAAKASVRRGAPFGRFDANMKDISELRIIRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=1093215 ACK8DA_RS16695 WP_415858137.1 3501279..3502163(-) (tonB2) [Acinetobacter baumannii strain MRSN122172]
ATGTTGAAAAAAAGAAGTCTATCCATAGAGCCTTTTTATTATTGGTGGCAAGACCGAGTCTTTATCGCTGCAATAATATT
AGCAATCTTACTGCATATTTTTGTGTTGCTCATCCATTTTGCGATGCCTGCGCCGTCAGAACAATCGACTAAAGAAATTG
CAATATCGATTCATCCTGCTGAAGATGTAATCAAGCATGCAGACTTTTTAGCTCAAGCCGATCAACAAGGTTCAGGAGCT
TTTCGGGCAGCTCATCGGATGTCGAGTAACTCTCCAGCGCCTATGCCAAGTGATGCTTCAACAGGAGAAGCTCAGCTAGA
AACTTTAGAAAAAGTGCAGCAACAAAGAGAACTTAAATTTGAAGAAAAAGTACTCATGACTGTATTGAGTTGGCAGAAAC
AAGCAGAGGAGAGCCAAAGAAAAAAAGCACTTGAACAATTACAAAGTCAGTTTCAGGTAAAAGCTGCCATGGTAGCGAGT
CTTGAAGCTCAGTATTTACAACGTCAGCAAGATTTTAGTCGCCAACAAAAGATAAAAACAGTAGATGGTATTCAAGCCAA
GAAAGATGCGTCAGCAGCTTATCTAGATAAATTTCGTGAAAAAGTAGAGCTTTATGGCAACCGTTATTATCCAGAAGAAG
CGAAACAGCAACAGTTAAAAGGTGAAGTTCGCCTTATGGTAATTTTGAATGCTCAAGGGGGAATTCGTGCAATTCGTTTG
CTTGAAAGCTCAGGTCATCCAGTTCTAGATGAAGCAGCAAAGGCATCGGTACGGCGTGGAGCGCCGTTTGGCCGTTTTGA
TGCAAATATGAAAGATATTTCGGAACTTCGTATTATTCGTACATGGCGTTTTGATCCAGCTGAAGCTGAATTTGAAGTTC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

98.639

100

0.986

Multiple sequence alignment