Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   ACMGE3_RS00565 Genome accession   NZ_CP179736
Coordinates   106426..108051 (-) Length   541 a.a.
NCBI ID   WP_414055558.1    Uniprot ID   -
Organism   Macrococcus sp. 18KM583     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 101426..113051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMGE3_RS00525 (ACMGE3_00525) - 101551..102057 (-) 507 WP_414055550.1 hypothetical protein -
  ACMGE3_RS00530 (ACMGE3_00530) - 102078..102962 (-) 885 WP_414055551.1 helix-turn-helix transcriptional regulator -
  ACMGE3_RS00535 (ACMGE3_00535) - 103144..103587 (-) 444 WP_414055552.1 JAB domain-containing protein -
  ACMGE3_RS00540 (ACMGE3_00540) - 103608..104111 (-) 504 WP_414055553.1 DUF1643 domain-containing protein -
  ACMGE3_RS00545 (ACMGE3_00545) - 104130..104456 (-) 327 WP_414055554.1 DUF960 family protein -
  ACMGE3_RS00550 (ACMGE3_00550) - 104519..104878 (-) 360 WP_414055555.1 SAUGI family uracil-DNA glycosylase inhibitor -
  ACMGE3_RS00555 (ACMGE3_00555) - 105097..105414 (+) 318 WP_414055556.1 PadR family transcriptional regulator -
  ACMGE3_RS00560 (ACMGE3_00560) - 105414..105953 (+) 540 WP_414055557.1 DUF2812 domain-containing protein -
  ACMGE3_RS00565 (ACMGE3_00565) ccrB 106426..108051 (-) 1626 WP_414055558.1 recombinase family protein Machinery gene
  ACMGE3_RS00570 (ACMGE3_00570) - 108075..109427 (-) 1353 WP_414055559.1 recombinase family protein -
  ACMGE3_RS00575 (ACMGE3_00575) - 109593..111419 (-) 1827 WP_414055560.1 DUF927 domain-containing protein -
  ACMGE3_RS00580 (ACMGE3_00580) - 111470..111841 (-) 372 WP_414055561.1 hypothetical protein -
  ACMGE3_RS00585 (ACMGE3_00585) - 111831..112256 (-) 426 WP_414055562.1 hypothetical protein -
  ACMGE3_RS00590 (ACMGE3_00590) - 112332..112577 (-) 246 WP_414055563.1 hypothetical protein -

Sequence

Protein


Download         Length: 541 a.a.        Molecular weight: 62043.41 Da        Isoelectric Point: 9.6078

>NTDB_id=1093145 ACMGE3_RS00565 WP_414055558.1 106426..108051(-) (ccrB) [Macrococcus sp. 18KM583]
MNKKAAIYARVSTVSQAEEGFSIDGQIALLKDICANNNYEVYDIYVDRGISGKNMNRPALVQMNEDARNGMFDIIMVYKA
NRLARNTSDLLKMVEEYQKYNIEFISHTEKFDTTNAAGKLMLQIMASMAEYERNQIVENVILGQTKRAKNGYYNGNSLLG
YDKIPDDKKHLKVNKSEAEIVRRIFNEYANGKGYRAIANGLNKDGLRTKKGNPFDIAGVKYILNNVFYIGQIKFQQYIGW
NEKRRKGYNPNPIIAEGKHEPIIEKELWDKVHRRMTEMSKKPQVHGKGTNVLTGLIRCPVCGHAHAASNTINTVKGEKKK
IRYYSCSQFKNKGASVCSANSIRADLIEPYVLNRIIEVINNDKILEKVVEKANERLQEQPIQIDRNINIKKAELDELRTK
LNNLKVAISTSPDLAPVLKDSINEYQNNITKIEHDIQLLTEKLKLNHIPTLSVDEVKVALEAIFKDIDRLEKHQLKTLYL
SVIEEIHFRKHKEPGKKYEFFITLKITPQILKEVFNDKQPEEAPLSASSLFLLQNTFYIEI

Nucleotide


Download         Length: 1626 bp        

>NTDB_id=1093145 ACMGE3_RS00565 WP_414055558.1 106426..108051(-) (ccrB) [Macrococcus sp. 18KM583]
ATGAATAAAAAAGCAGCAATCTACGCAAGGGTATCAACTGTCTCACAAGCTGAAGAAGGATTCAGTATTGATGGTCAAAT
TGCATTATTAAAAGACATATGCGCTAATAATAATTATGAAGTTTATGATATTTACGTCGATAGAGGTATTAGTGGTAAGA
ATATGAATCGACCAGCACTTGTTCAAATGAATGAAGATGCAAGAAATGGAATGTTCGATATCATCATGGTTTATAAAGCA
AACCGCTTAGCTCGTAACACATCAGATTTATTAAAAATGGTGGAAGAATACCAAAAATACAATATCGAATTCATCAGCCA
CACGGAAAAATTCGATACGACAAATGCTGCCGGCAAGCTCATGCTTCAAATCATGGCCAGCATGGCTGAGTATGAACGTA
ATCAAATTGTAGAGAACGTAATTTTAGGTCAAACAAAGAGAGCAAAAAATGGTTATTATAATGGGAATAGTTTATTGGGC
TATGACAAAATTCCCGACGATAAAAAACATTTAAAAGTCAATAAATCAGAAGCTGAAATTGTTAGAAGAATATTTAACGA
ATACGCCAATGGTAAAGGTTATCGTGCAATTGCGAATGGTCTAAACAAAGATGGACTTAGAACAAAGAAAGGTAATCCAT
TCGATATTGCTGGTGTGAAGTATATCCTTAATAATGTGTTTTACATCGGTCAGATCAAGTTCCAACAATACATCGGATGG
AATGAAAAGAGACGTAAGGGTTATAACCCTAATCCAATTATCGCAGAAGGTAAGCATGAGCCAATTATTGAAAAAGAACT
GTGGGATAAGGTTCATCGTCGTATGACAGAAATGAGCAAGAAGCCTCAAGTTCATGGTAAAGGGACGAATGTATTAACCG
GCCTGATCCGATGCCCTGTCTGCGGCCATGCACATGCTGCATCTAACACCATCAACACGGTAAAGGGTGAGAAGAAAAAG
ATCCGTTATTATTCATGTAGTCAATTTAAAAATAAAGGTGCATCGGTATGTTCAGCAAATTCAATTCGTGCTGACCTTAT
AGAACCATACGTTTTGAACAGAATCATTGAAGTCATTAATAACGATAAAATTTTAGAAAAAGTTGTTGAAAAAGCGAATG
AACGACTTCAGGAACAACCTATTCAGATAGATCGTAACATCAACATTAAAAAAGCTGAACTGGATGAATTACGAACAAAA
CTTAATAACCTCAAAGTTGCTATATCCACTTCTCCTGATTTAGCACCAGTATTAAAAGACAGTATTAATGAGTACCAAAA
CAATATCACAAAAATCGAGCATGATATCCAATTACTCACAGAAAAACTTAAACTGAATCATATACCTACTCTATCCGTTG
ATGAAGTTAAGGTAGCTCTTGAAGCTATTTTTAAAGATATAGACCGTTTGGAGAAACATCAACTTAAAACCTTGTACTTA
TCAGTCATCGAAGAAATTCACTTTAGAAAACACAAAGAACCCGGAAAGAAATATGAATTTTTCATCACACTAAAAATCAC
ACCGCAAATATTAAAAGAAGTGTTCAATGATAAACAACCAGAGGAAGCGCCACTCAGCGCTTCCTCTTTATTTTTGCTTC
AAAATACATTTTATATCGAAATATAA

Domains

Predicted by InterproScan.

Resolvase, N terminal domain (Resolvase)

(5-152)

Recombinase (Recombinase)

(176-277)

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(291-355)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

52.778

99.815

0.527

Multiple sequence alignment