Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   ACMGE4_RS03440 Genome accession   NZ_CP179735
Coordinates   645860..648256 (+) Length   798 a.a.
NCBI ID   WP_414046215.1    Uniprot ID   -
Organism   Macrococcus sp. 18KM445     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 640860..653256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMGE4_RS03415 (ACMGE4_03415) cymR 641228..641647 (+) 420 WP_414046210.1 cysteine metabolism transcriptional regulator CymR -
  ACMGE4_RS03420 (ACMGE4_03420) - 641673..642674 (-) 1002 WP_414046211.1 LLM class flavin-dependent oxidoreductase -
  ACMGE4_RS03425 (ACMGE4_03425) - 642854..643993 (+) 1140 WP_414046212.1 cysteine desulfurase family protein -
  ACMGE4_RS03430 (ACMGE4_03430) mnmA 643999..645117 (+) 1119 WP_414046213.1 tRNA 2-thiouridine(34) synthase MnmA -
  ACMGE4_RS03435 (ACMGE4_03435) - 645198..645857 (+) 660 WP_414046214.1 tetratricopeptide repeat protein -
  ACMGE4_RS03440 (ACMGE4_03440) recD2 645860..648256 (+) 2397 WP_414046215.1 ATP-dependent RecD-like DNA helicase Machinery gene
  ACMGE4_RS03445 (ACMGE4_03445) alaS 648504..651128 (+) 2625 WP_414046216.1 alanine--tRNA ligase -
  ACMGE4_RS03450 (ACMGE4_03450) - 651190..651459 (+) 270 WP_414046217.1 IreB family regulatory phosphoprotein -
  ACMGE4_RS03455 (ACMGE4_03455) ruvX 651452..651871 (+) 420 WP_414046218.1 Holliday junction resolvase RuvX -
  ACMGE4_RS03460 (ACMGE4_03460) - 651886..652203 (+) 318 WP_414046219.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 90872.53 Da        Isoelectric Point: 4.6849

>NTDB_id=1093116 ACMGE4_RS03440 WP_414046215.1 645860..648256(+) (recD2) [Macrococcus sp. 18KM445]
MENATLFDKSYVKGTINRILFQNNDNFYTVLKAEVIDTNEDFDDEVTVTGFLPQIAEGDTYTFTGKLVTHAKYGKQLQAE
KFEKDLPQSKDGIIHYLSSDLFKGIGKKTARTIVETLGEDALNIILDDKSSLDKIPKLSQEKKDLIYNTINENQAIEKIM
IQLNDWGFGPQLAMKIYQFYKEDTVRAIKESPYQLVLDIEGIGFNKADDLAKHIGIDNNHPERLKAALVYGLDQASIQNG
HTYIPDQILLETSYELLTKNGSEVNPDSLVRALNELCEEKKFLVEHEKNIYIPSLFYSETKTVQILYRLMNHKDQLKEFE
QSEVMLAIGEIEQLFEVSYAEKQKEALMQAMKSKLMILSGGPGTGKTTVVRGIVTLYAELHGLSLDYNDYEEQDFPIVVA
APTGRASKRLYESTGLEATTIHRLIGWTRDNKPDDILENEITAKLIIIDEMSMVDTWLMFQLMKAVPNDAQIIFVGDQDQ
LPSVGPGQVFKDLIESQIIPQIELNEVYRQQEGSSIVELAHQIKRNEPFDITQRYSDRSFIPCHAEQIPEVIEKVVTSAV
NKGYDMRDIQVLAPIYRGNAGIRALNKVLQRILNPADDKKREMIFGEIVYRHHDKVLQLVNRPEDGVFNGDIGEVVGIFK
ANENALNKDVVIVDYDGNEVTYTKADLIEITHAYCCSIHKSQGSEFPIVIMPVVNQYYRMLQKNILYTGLTRAKQSLIFC
GDVNAFNEGIKRLGNTRFTSFYQFLMDYFNTDEQKIITQENSLQGSVLPFKVGEMTEENMHLISPMINMEDISPYDYV

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=1093116 ACMGE4_RS03440 WP_414046215.1 645860..648256(+) (recD2) [Macrococcus sp. 18KM445]
TTGGAGAATGCCACTTTATTCGACAAATCTTATGTAAAAGGCACTATTAACCGCATATTGTTTCAAAATAATGATAACTT
TTATACGGTTTTGAAAGCCGAAGTAATTGATACAAATGAAGATTTTGACGATGAAGTGACGGTTACAGGGTTTCTTCCGC
AAATTGCTGAAGGGGATACTTATACGTTCACTGGTAAGCTGGTCACGCACGCTAAGTATGGGAAACAGCTTCAAGCTGAA
AAGTTTGAAAAAGATTTACCTCAGTCAAAAGATGGAATCATCCATTATTTATCAAGCGATTTATTTAAAGGAATCGGAAA
GAAGACAGCTCGTACAATTGTTGAGACACTCGGGGAAGATGCATTAAATATTATCTTAGATGATAAGTCAAGCTTAGATA
AAATACCGAAGCTATCCCAGGAAAAAAAAGATTTAATTTATAATACGATAAATGAAAACCAAGCAATCGAAAAAATTATG
ATTCAGCTCAATGACTGGGGATTCGGACCGCAGCTTGCAATGAAAATCTATCAGTTTTATAAAGAGGACACTGTCCGTGC
GATTAAAGAATCACCTTACCAACTAGTTCTGGATATAGAAGGGATAGGATTTAATAAGGCGGACGATCTTGCAAAACATA
TTGGGATTGATAACAATCACCCGGAAAGACTTAAGGCAGCACTTGTCTATGGACTTGATCAGGCATCTATACAAAATGGA
CATACTTATATACCGGATCAGATATTACTGGAAACAAGCTATGAATTGCTTACCAAAAACGGTTCAGAGGTCAATCCTGA
TAGCCTTGTTCGTGCACTGAATGAACTATGTGAGGAAAAGAAATTCTTAGTTGAACATGAAAAAAATATATACATACCTA
GTCTATTTTATTCTGAGACAAAAACCGTACAAATCTTATATCGATTGATGAATCATAAAGATCAACTGAAAGAATTTGAA
CAATCTGAAGTTATGCTTGCCATTGGTGAAATTGAACAATTATTTGAAGTATCATACGCAGAAAAGCAAAAAGAAGCGTT
AATGCAGGCAATGAAAAGCAAACTAATGATTTTATCAGGTGGTCCTGGGACCGGTAAAACAACTGTCGTAAGAGGCATTG
TAACGTTATATGCAGAATTACATGGTCTAAGTCTGGATTATAATGATTATGAGGAACAAGATTTTCCTATCGTTGTGGCT
GCACCGACAGGTAGAGCTTCGAAACGCTTATATGAGTCAACAGGTCTTGAAGCTACTACGATACATCGTTTAATTGGTTG
GACGAGAGATAACAAACCGGATGATATTTTAGAAAACGAAATTACTGCTAAGCTAATCATTATTGATGAGATGTCAATGG
TTGATACTTGGTTGATGTTTCAGTTGATGAAAGCCGTTCCTAACGATGCACAAATCATCTTTGTAGGTGATCAGGATCAG
TTACCGTCAGTCGGCCCTGGTCAAGTATTTAAAGATCTAATAGAATCACAAATTATTCCGCAGATCGAACTGAATGAAGT
ATATCGTCAACAGGAAGGTTCATCGATTGTTGAACTCGCACACCAGATTAAACGAAACGAACCATTTGATATTACACAGC
GTTATAGTGACCGTAGTTTTATTCCTTGTCATGCAGAACAAATACCAGAGGTTATTGAAAAGGTGGTGACTTCTGCTGTA
AATAAAGGATATGATATGCGTGACATTCAAGTCCTCGCCCCTATTTACCGTGGGAACGCTGGTATTCGAGCACTGAATAA
AGTGTTACAAAGAATCCTCAATCCTGCAGACGATAAAAAGCGTGAAATGATTTTTGGTGAAATAGTATATCGTCACCATG
ATAAAGTTCTACAGCTTGTTAATCGACCTGAAGATGGGGTGTTTAACGGTGATATCGGTGAAGTTGTCGGCATTTTTAAA
GCGAATGAAAATGCGCTGAATAAAGATGTCGTCATTGTTGATTATGACGGTAATGAAGTAACCTATACGAAAGCAGATTT
AATAGAAATTACGCATGCCTATTGTTGCTCGATTCATAAATCGCAAGGTTCAGAGTTTCCGATCGTTATTATGCCTGTTG
TCAATCAGTACTATAGAATGCTTCAGAAAAATATATTATATACAGGATTAACACGTGCGAAACAGTCTTTAATTTTCTGT
GGTGATGTGAATGCATTTAATGAGGGAATTAAGCGTCTAGGGAATACCCGATTCACATCTTTCTATCAATTTTTAATGGA
CTATTTTAATACAGATGAACAAAAAATAATAACCCAGGAAAATTCCTTACAAGGTTCTGTCTTACCATTTAAAGTTGGTG
AGATGACTGAAGAAAATATGCATCTCATTTCTCCGATGATTAATATGGAAGATATTTCACCATATGATTACGTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(152-243)

AAA domain (AAA_30)

(339-545)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(672-719)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-653)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

50.688

100

0.508

Multiple sequence alignment