Detailed information    

insolico Bioinformatically predicted

Overview


Name   ceuB   Type   Machinery gene
Locus tag   ACMGE6_RS05525 Genome accession   NZ_CP179732
Coordinates   1038593..1039546 (+) Length   317 a.a.
NCBI ID   WP_414047311.1    Uniprot ID   -
Organism   Macrococcus sp. 21KM1573     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1033593..1044546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMGE6_RS05490 (ACMGE6_05490) - 1034048..1034404 (-) 357 WP_414054720.1 YojF family protein -
  ACMGE6_RS05495 (ACMGE6_05495) thiD 1034535..1035365 (-) 831 WP_414054721.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACMGE6_RS05500 (ACMGE6_05500) - 1035474..1036127 (+) 654 WP_414054722.1 uracil-DNA glycosylase -
  ACMGE6_RS05505 (ACMGE6_05505) - 1036130..1036438 (+) 309 WP_414054723.1 DUF5327 family protein -
  ACMGE6_RS05510 (ACMGE6_05510) - 1036457..1036819 (+) 363 WP_414054724.1 DUF423 domain-containing protein -
  ACMGE6_RS05515 (ACMGE6_05515) - 1036859..1036981 (-) 123 WP_414045526.1 hypothetical protein -
  ACMGE6_RS05520 (ACMGE6_05520) - 1037048..1038394 (-) 1347 WP_414054725.1 APC family permease -
  ACMGE6_RS05525 (ACMGE6_05525) ceuB 1038593..1039546 (+) 954 WP_414047311.1 ABC transporter permease Machinery gene
  ACMGE6_RS05530 (ACMGE6_05530) - 1039539..1040492 (+) 954 WP_414054726.1 iron chelate uptake ABC transporter family permease subunit -
  ACMGE6_RS05535 (ACMGE6_05535) - 1040485..1041291 (+) 807 WP_414054727.1 ABC transporter ATP-binding protein -
  ACMGE6_RS05540 (ACMGE6_05540) - 1041387..1042424 (+) 1038 WP_414054728.1 ferrated catecholamine ABC transporter substrate-binding lipoprotein SstD -
  ACMGE6_RS05545 (ACMGE6_05545) - 1042635..1043165 (+) 531 WP_414047307.1 hypothetical protein -
  ACMGE6_RS05550 (ACMGE6_05550) hemQ 1043330..1044079 (-) 750 WP_414045532.1 hydrogen peroxide-dependent heme synthase -

Sequence


Protein


Download         Length: 317 a.a.        Molecular weight: 34885.50 Da        Isoelectric Point: 10.4858

>NTDB_id=1093057 ACMGE6_RS05525 WP_414047311.1 1038593..1039546(+) (ceuB) [Macrococcus sp. 21KM1573]
MKMIYGLIALVLLSIVSIFVGVIDISPQHLMHLSDNQKNILINSRFPRTLSIILAGVALSVAGLLMQQLTRNKFVSPTTA
GTMDFAKFGVLISMIFFAQAPLLVKLGFSITTAILGTFMFMWIVNRIKFKDAIFIPLVGLMLGNIVSSLATFMALRFNAM
QSISNFFVGDFSMITKGRYEVLYIIIPMVIIMYFFAHHFTIVGMGELFSKNLGISYNKIMNLGVVIAAVVSATVVVTIGV
LPFLGLIVPNIVGLFVGDHMNKALPYTALLGAIIVMIADIFSRIIIFPYEIPIGLTLGILGSVVFMVILLKRRKEYA

Nucleotide


Download         Length: 954 bp        

>NTDB_id=1093057 ACMGE6_RS05525 WP_414047311.1 1038593..1039546(+) (ceuB) [Macrococcus sp. 21KM1573]
ATGAAAATGATTTATGGTCTTATCGCATTAGTATTATTATCGATTGTATCGATTTTTGTAGGAGTGATTGATATTTCACC
GCAACATTTAATGCATTTATCGGACAATCAGAAAAATATTTTAATAAACAGTCGTTTCCCGAGGACGCTCTCTATTATAT
TAGCAGGCGTGGCATTAAGTGTTGCAGGGTTACTAATGCAGCAGCTTACACGTAATAAATTCGTCTCACCGACGACGGCA
GGGACGATGGATTTCGCGAAGTTTGGTGTATTGATATCAATGATTTTCTTTGCACAAGCGCCATTATTAGTGAAACTCGG
CTTTAGTATTACAACTGCAATTTTAGGAACATTTATGTTTATGTGGATTGTTAATCGTATTAAGTTTAAAGATGCGATAT
TCATTCCGCTTGTCGGATTGATGTTGGGTAATATCGTTTCCAGCTTAGCAACATTTATGGCATTAAGATTTAATGCAATG
CAAAGCATTTCTAACTTCTTTGTCGGTGATTTTTCGATGATTACGAAAGGACGTTATGAAGTGCTGTATATCATCATTCC
AATGGTTATTATTATGTATTTCTTTGCACATCACTTTACGATTGTTGGGATGGGAGAGTTATTTAGTAAGAACTTAGGAA
TCTCATACAACAAGATAATGAATCTCGGTGTAGTCATTGCCGCAGTGGTTTCAGCGACTGTCGTTGTAACAATCGGTGTA
TTACCGTTTCTGGGATTAATCGTTCCGAATATCGTTGGACTTTTTGTCGGAGATCATATGAATAAAGCGTTACCGTACAC
TGCGCTTCTCGGTGCGATAATTGTAATGATTGCTGATATATTCAGCCGAATTATTATCTTTCCATACGAAATACCGATAG
GGCTAACGCTAGGTATTTTAGGTAGTGTTGTATTCATGGTCATCCTTCTGAAAAGGAGGAAAGAATATGCATAA

Domains


Predicted by InterproScan.

(10-311)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

49.679

98.423

0.489


Multiple sequence alignment