Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACMGE6_RS05270 Genome accession   NZ_CP179732
Coordinates   987763..989124 (+) Length   453 a.a.
NCBI ID   WP_414047337.1    Uniprot ID   -
Organism   Macrococcus sp. 21KM1573     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 982763..994124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMGE6_RS05250 (ACMGE6_05250) - 983309..983770 (+) 462 WP_414045475.1 CtsR family transcriptional regulator -
  ACMGE6_RS05255 (ACMGE6_05255) - 983782..984174 (+) 393 WP_414045476.1 UvrB/UvrC motif-containing protein -
  ACMGE6_RS05260 (ACMGE6_05260) - 984164..985174 (+) 1011 WP_414054696.1 protein arginine kinase -
  ACMGE6_RS05265 (ACMGE6_05265) - 985187..987610 (+) 2424 WP_414054697.1 ATP-dependent Clp protease ATP-binding subunit -
  ACMGE6_RS05270 (ACMGE6_05270) radA 987763..989124 (+) 1362 WP_414047337.1 DNA repair protein RadA Machinery gene
  ACMGE6_RS05275 (ACMGE6_05275) - 989137..990192 (+) 1056 WP_414054698.1 PIN/TRAM domain-containing protein -
  ACMGE6_RS05280 (ACMGE6_05280) ispD 990194..990865 (+) 672 WP_414054699.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  ACMGE6_RS05285 (ACMGE6_05285) ispF 990862..991344 (+) 483 WP_414047336.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  ACMGE6_RS05290 (ACMGE6_05290) gltX 991358..992809 (+) 1452 WP_414054700.1 glutamate--tRNA ligase -
  ACMGE6_RS05295 (ACMGE6_05295) cysE 993068..993709 (+) 642 WP_414045484.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 50276.93 Da        Isoelectric Point: 7.4858

>NTDB_id=1093056 ACMGE6_RS05270 WP_414047337.1 987763..989124(+) (radA) [Macrococcus sp. 21KM1573]
MAKAKSTFECMACGYQSPKWMGKCPNCGAWNQMEEVIEHKQKGPKTAIHQQDSNSKVEKLKNITKESVPRDHTQMGELDR
VLGGGIVPGSLILIGGDPGIGKSTLLLQVCAMLSQRHPVLYISGEESVRQTKLRADRLKEDAGELDVYAETNLQIIHETV
KKMQPRFLVIDSIQTIFHPEVTSAPGSVSQVRECTQELMRIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGD
THHSYRILRAVKNRFGSTNEMGIFEMRNTGLTEVLNPSEMFLEERTKNVAGSTIVATMEGTRPLLVEVQSLVSPTSFHNP
RRMATGIDHNRLTLLMAVLEKKQGYLLQQQDAYVKVAGGVKLDEPAVDLSIIISIASSYNDKPTRGDDCFIGEVGLTGEV
RRVARIEQRVQEAEKLGFKRIIIPKNNIGGWDFPGNIEVIGVTNISEALKLAF

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1093056 ACMGE6_RS05270 WP_414047337.1 987763..989124(+) (radA) [Macrococcus sp. 21KM1573]
TTGGCTAAAGCAAAATCAACATTTGAATGTATGGCCTGTGGTTATCAATCCCCAAAATGGATGGGTAAATGTCCAAATTG
TGGTGCCTGGAACCAGATGGAAGAGGTTATTGAACATAAACAAAAAGGTCCGAAGACTGCGATACATCAACAAGATTCAA
ATTCTAAAGTAGAAAAATTAAAAAATATCACTAAGGAAAGTGTTCCGCGGGACCACACACAAATGGGTGAACTTGATCGA
GTATTAGGAGGCGGCATCGTTCCGGGTTCTCTTATATTAATTGGAGGAGACCCTGGTATCGGGAAATCTACATTGCTATT
ACAAGTGTGTGCGATGTTATCTCAGAGACATCCGGTACTATATATATCAGGTGAAGAATCAGTGAGACAGACAAAGCTAA
GAGCTGACAGACTTAAAGAAGATGCTGGCGAACTTGATGTATATGCTGAAACCAATCTGCAGATTATTCACGAGACAGTG
AAGAAAATGCAACCAAGATTTCTGGTGATTGACTCCATTCAGACAATATTCCATCCGGAAGTCACAAGTGCACCAGGATC
TGTATCGCAAGTACGAGAATGTACACAGGAATTAATGCGTATTGCAAAACAGATGAATATTGCCACGTTTATAGTGGGTC
ATGTAACGAAAGAAGGCCAAATTGCTGGTCCGCGTTTACTTGAACATATGGTAGATACCGTATTGTATTTTGAAGGAGAT
ACACATCACAGTTATCGTATACTACGAGCTGTAAAAAACCGTTTTGGTTCGACTAACGAGATGGGTATATTTGAAATGCG
TAACACAGGTTTAACGGAAGTCCTAAATCCGAGCGAGATGTTCCTCGAGGAACGCACGAAAAATGTGGCAGGCTCAACAA
TTGTTGCCACAATGGAAGGCACACGACCATTGCTTGTTGAAGTACAATCACTTGTATCACCAACTTCTTTCCATAATCCA
AGACGTATGGCGACAGGTATAGACCACAACCGTTTAACACTACTTATGGCTGTGCTTGAGAAGAAGCAAGGTTATTTATT
ACAACAGCAGGATGCTTACGTTAAAGTGGCCGGTGGTGTGAAGTTAGATGAACCTGCAGTCGATCTAAGTATTATTATTA
GTATTGCATCAAGCTATAATGATAAACCGACACGTGGAGATGACTGCTTTATTGGTGAAGTCGGATTAACAGGGGAAGTG
CGTCGGGTAGCACGTATTGAACAACGTGTTCAGGAAGCGGAAAAGCTAGGTTTCAAACGAATCATTATACCGAAGAATAA
CATCGGAGGATGGGATTTCCCAGGTAATATTGAAGTCATCGGTGTAACGAATATTAGTGAAGCATTAAAGCTGGCATTTT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(69-219)

Subunit ChlI of Mg-chelatase (ChlI)

(343-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

67.982

100

0.684
  radA Streptococcus pneumoniae Rx1

62.031

100

0.62
  radA Streptococcus pneumoniae D39

62.031

100

0.62
  radA Streptococcus pneumoniae R6

62.031

100

0.62
  radA Streptococcus pneumoniae TIGR4

62.031

100

0.62
  radA Streptococcus mitis NCTC 12261

62.031

100

0.62
  radA Streptococcus mitis SK321

62.031

100

0.62

Multiple sequence alignment