Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   HW07_RS09355 Genome accession   NZ_CP008859
Coordinates   1966551..1966880 (+) Length   109 a.a.
NCBI ID   WP_023109812.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain H5708     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1961551..1971880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HW07_RS09340 (HW07_29800) - 1962251..1963210 (+) 960 WP_004350973.1 UDP-glucose 4-epimerase family protein -
  HW07_RS09345 (HW07_23735) - 1963207..1964232 (+) 1026 WP_004350972.1 MraY family glycosyltransferase -
  HW07_RS09350 (HW07_23730) - 1964363..1966360 (+) 1998 WP_023091542.1 polysaccharide biosynthesis protein -
  HW07_RS09355 (HW07_23725) comEA/comE1 1966551..1966880 (+) 330 WP_023109812.1 ComEA family DNA-binding protein Machinery gene
  HW07_RS09365 (HW07_23715) - 1967097..1968293 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  HW07_RS09370 (HW07_23710) uvrB 1968481..1970493 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11367.31 Da        Isoelectric Point: 8.0459

>NTDB_id=109300 HW07_RS09355 WP_023109812.1 1966551..1966880(+) (comEA/comE1) [Pseudomonas aeruginosa strain H5708]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLASTTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=109300 HW07_RS09355 WP_023109812.1 1966551..1966880(+) (comEA/comE1) [Pseudomonas aeruginosa strain H5708]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCAGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCTCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385