Detailed information
Bioinformatically predicted
Overview
| Name | nucA/comI | Type | Machinery gene |
| Locus tag | ACK25W_RS08350 | Genome accession | NZ_CP179722 |
| Coordinates | 1678987..1679367 (+) | Length | 126 a.a. |
| NCBI ID | WP_045210079.1 | Uniprot ID | - |
| Organism | Bacillus pumilus strain FJAT-56819 | ||
| Function | cleavage of dsDNA into ssDNA (predicted from homology) DNA processing |
||
Genomic Context
Location: 1673987..1684367
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACK25W_RS08340 (ACK25W_08340) | - | 1674478..1677621 (+) | 3144 | WP_414051836.1 | bifunctional cytochrome P450/NADPH--P450 reductase | - |
| ACK25W_RS08345 (ACK25W_08345) | - | 1677810..1678718 (+) | 909 | WP_414051837.1 | trypsin-like serine peptidase | - |
| ACK25W_RS08350 (ACK25W_08350) | nucA/comI | 1678987..1679367 (+) | 381 | WP_045210079.1 | NucA/NucB deoxyribonuclease domain-containing protein | Machinery gene |
| ACK25W_RS08355 (ACK25W_08355) | - | 1679515..1680363 (+) | 849 | WP_066030856.1 | STAS domain-containing protein | - |
| ACK25W_RS08360 (ACK25W_08360) | - | 1680397..1680939 (-) | 543 | WP_034660768.1 | IseA DL-endopeptidase inhibitor family protein | - |
| ACK25W_RS08365 (ACK25W_08365) | - | 1681234..1681671 (+) | 438 | WP_034660769.1 | hypothetical protein | - |
| ACK25W_RS08370 (ACK25W_08370) | lexA | 1681719..1682339 (-) | 621 | WP_003212311.1 | transcriptional repressor LexA | - |
| ACK25W_RS08375 (ACK25W_08375) | yneA | 1682499..1682810 (+) | 312 | WP_260336091.1 | cell division suppressor protein YneA | - |
| ACK25W_RS08380 (ACK25W_08380) | - | 1682828..1683475 (+) | 648 | WP_003211322.1 | recombinase family protein | - |
| ACK25W_RS08385 (ACK25W_08385) | - | 1683545..1683775 (+) | 231 | WP_034660771.1 | DUF896 domain-containing protein | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13766.45 Da Isoelectric Point: 8.4984
>NTDB_id=1092852 ACK25W_RS08350 WP_045210079.1 1678987..1679367(+) (nucA/comI) [Bacillus pumilus strain FJAT-56819]
MGTLLGGFGEKHAAKGADRYDHVIQFPKERYPETGSHIQEAIRKGHSDVCTIDRNGADARRQESLKGIPTKPGFDRDEWP
MAVCLEGGKGASVQYVSPSDNRGAGSWVGHQISGYPDGKRILFIVK
MGTLLGGFGEKHAAKGADRYDHVIQFPKERYPETGSHIQEAIRKGHSDVCTIDRNGADARRQESLKGIPTKPGFDRDEWP
MAVCLEGGKGASVQYVSPSDNRGAGSWVGHQISGYPDGKRILFIVK
Nucleotide
Download Length: 381 bp
>NTDB_id=1092852 ACK25W_RS08350 WP_045210079.1 1678987..1679367(+) (nucA/comI) [Bacillus pumilus strain FJAT-56819]
ATGGGCACGTTGTTAGGTGGATTTGGGGAGAAACATGCGGCAAAAGGTGCGGATCGATATGATCATGTCATTCAATTTCC
AAAGGAACGGTACCCTGAAACAGGCAGCCATATTCAAGAAGCCATTCGAAAAGGGCATTCAGATGTGTGTACGATAGACC
GAAATGGAGCAGATGCCCGCAGGCAAGAATCATTAAAAGGAATTCCGACTAAACCTGGCTTTGACCGGGATGAGTGGCCG
ATGGCGGTTTGTCTTGAGGGAGGAAAAGGTGCGAGTGTTCAATATGTCAGCCCATCTGATAATAGGGGAGCAGGCTCATG
GGTTGGACACCAGATCAGCGGTTATCCTGATGGGAAAAGAATTTTATTTATTGTGAAATAA
ATGGGCACGTTGTTAGGTGGATTTGGGGAGAAACATGCGGCAAAAGGTGCGGATCGATATGATCATGTCATTCAATTTCC
AAAGGAACGGTACCCTGAAACAGGCAGCCATATTCAAGAAGCCATTCGAAAAGGGCATTCAGATGTGTGTACGATAGACC
GAAATGGAGCAGATGCCCGCAGGCAAGAATCATTAAAAGGAATTCCGACTAAACCTGGCTTTGACCGGGATGAGTGGCCG
ATGGCGGTTTGTCTTGAGGGAGGAAAAGGTGCGAGTGTTCAATATGTCAGCCCATCTGATAATAGGGGAGCAGGCTCATG
GGTTGGACACCAGATCAGCGGTTATCCTGATGGGAAAAGAATTTTATTTATTGTGAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| nucA/comI | Bacillus subtilis subsp. subtilis str. 168 |
57.983 |
94.444 |
0.548 |