Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   ACK25W_RS06725 Genome accession   NZ_CP179722
Coordinates   1346703..1346981 (+) Length   92 a.a.
NCBI ID   WP_034662686.1    Uniprot ID   A0AAE3WJG5
Organism   Bacillus pumilus strain FJAT-56819     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1341703..1351981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK25W_RS06705 (ACK25W_06705) - 1342018..1343637 (+) 1620 WP_034662692.1 ABC-F family ATP-binding cassette domain-containing protein -
  ACK25W_RS06710 (ACK25W_06710) - 1343874..1345106 (-) 1233 WP_060596159.1 aminopeptidase -
  ACK25W_RS06715 (ACK25W_06715) - 1345213..1345344 (-) 132 WP_003210922.1 protein YkpC -
  ACK25W_RS06720 (ACK25W_06720) mreBH 1345419..1346426 (-) 1008 WP_060596160.1 rod-share determining protein MreBH -
  ACK25W_RS06725 (ACK25W_06725) abrB 1346703..1346981 (+) 279 WP_034662686.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  ACK25W_RS06730 (ACK25W_06730) - 1347126..1348436 (+) 1311 WP_106041765.1 ATP-binding protein -
  ACK25W_RS06735 (ACK25W_06735) - 1348441..1349277 (+) 837 WP_106042315.1 gamma-glutamylcyclotransferase -
  ACK25W_RS06740 (ACK25W_06740) - 1349315..1349983 (+) 669 WP_034662681.1 potassium channel family protein -
  ACK25W_RS06745 (ACK25W_06745) ade 1350246..1351976 (+) 1731 WP_066030957.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10305.97 Da        Isoelectric Point: 4.5332

>NTDB_id=1092847 ACK25W_RS06725 WP_034662686.1 1346703..1346981(+) (abrB) [Bacillus pumilus strain FJAT-56819]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSMEFFIDGEKIVLKKYQPEGVCLMTGEITSENHDYGNGQITLSAEGAE
LLLKELQEALQQ

Nucleotide


Download         Length: 279 bp        

>NTDB_id=1092847 ACK25W_RS06725 WP_034662686.1 1346703..1346981(+) (abrB) [Bacillus pumilus strain FJAT-56819]
TTGAAATCTATCGGAGTCGTAAGAAAAGTAGACGAACTAGGGCGTATTGTGATGCCAATCGAATTAAGAAGAGCACTTGA
TATTGCTATTAAAGACAGTATGGAATTTTTTATAGATGGGGAGAAAATCGTCTTGAAAAAATACCAGCCAGAGGGCGTTT
GCCTCATGACTGGTGAGATTACATCGGAGAACCATGATTATGGAAATGGTCAAATTACATTAAGCGCTGAAGGCGCAGAA
CTACTGTTAAAAGAGCTGCAAGAAGCTCTTCAGCAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

100

0.554

Multiple sequence alignment