Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpC   Type   Regulator
Locus tag   ACK25W_RS06325 Genome accession   NZ_CP179722
Coordinates   1271324..1273426 (-) Length   700 a.a.
NCBI ID   WP_414051821.1    Uniprot ID   -
Organism   Bacillus pumilus strain FJAT-56819     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1266324..1278426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK25W_RS06300 (ACK25W_06300) - 1266912..1267154 (+) 243 WP_034662891.1 aspartyl-phosphate phosphatase Spo0E family protein -
  ACK25W_RS06305 (ACK25W_06305) - 1267201..1268706 (-) 1506 WP_066030978.1 ATP-binding protein -
  ACK25W_RS06310 (ACK25W_06310) - 1268912..1269367 (+) 456 WP_034662884.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACK25W_RS06315 (ACK25W_06315) motB 1269397..1270161 (-) 765 WP_060596120.1 flagellar motor protein MotB -
  ACK25W_RS06320 (ACK25W_06320) motA 1270154..1270948 (-) 795 WP_034662877.1 flagellar motor stator protein MotA -
  ACK25W_RS06325 (ACK25W_06325) clpC 1271324..1273426 (-) 2103 WP_414051821.1 AAA family ATPase Regulator
  ACK25W_RS06330 (ACK25W_06330) - 1273670..1274713 (+) 1044 WP_066030976.1 hypothetical protein -
  ACK25W_RS06335 (ACK25W_06335) queC 1274989..1275645 (+) 657 WP_024424683.1 7-cyano-7-deazaguanine synthase QueC -
  ACK25W_RS06340 (ACK25W_06340) queD 1275646..1276086 (+) 441 WP_278022920.1 6-carboxytetrahydropterin synthase QueD -
  ACK25W_RS06345 (ACK25W_06345) queE 1276079..1276810 (+) 732 WP_034662862.1 7-carboxy-7-deazaguanine synthase QueE -
  ACK25W_RS06350 (ACK25W_06350) queF 1276826..1277323 (+) 498 WP_003211403.1 preQ(1) synthase -
  ACK25W_RS06355 (ACK25W_06355) - 1277594..1277812 (+) 219 WP_034662856.1 hypothetical protein -
  ACK25W_RS06360 (ACK25W_06360) - 1277936..1278124 (-) 189 WP_003211747.1 YkvS family protein -

Sequence

Protein


Download         Length: 700 a.a.        Molecular weight: 78008.63 Da        Isoelectric Point: 5.0839

>NTDB_id=1092844 ACK25W_RS06325 WP_414051821.1 1271324..1273426(-) (clpC) [Bacillus pumilus strain FJAT-56819]
MRCQHCQVNEATIRLNMQVNSSRSQMVLCEDCYTSLMEQSKMKMGPQLFGGSSFFSEQAGHAQSVEQPKQKGLLDELGRN
LKDGANAGLIDPVIGRDEEVARVIEILNRRNKNNPVLIGEPGVGKTAIAEGLALKIASGDVPNKLKNKQIYLLDVSSLVA
NTGIRGQFEERMKQLIKELQSRKNIILFVDEIHLLVGAGSAEGSMDAGNILKPALARGELQLVGATTLKEYRQIEKDAAL
ERRFQPVIVDEPTQDEAVEILKGIQDKYESYHGVTYSDEAIQACVQLSSRYIQDRHLPDKAIDLMDEAGSKANLSIDAAS
EDELTNRLTEIAAEKQAALKEEQYEKAAKLRDEEEAIEARLQNKTNDKEHVVTAEAIQAIVEQKTGIPVGKLQADEQTKM
KEMDVRLKARVIGQEHAVEKVAKAVKRSRAGLKSKHRPTGSFLFVGPTGVGKTELSKTLAEELFGSRDAIIRLDMSEYME
KHSVSKLIGSPPGYVGHDEAGQLTEKVRRKPYSIILLDEIEKAHPDVQHMFLQIMEDGRLTDSQGRTVSFKDTVIIMTSN
AGSTDKTVKVGFQSDQEEAIEEQSLIDSLSAYFKPEFLNRFDSIIQFDSLDRDDLVKIVDLLLNELSEQLKEQHLTVHVS
KEAKEKIAELGYHPAFGARPLRRTIQEHVEDQMTEILLEEEKLSGFTVDVEDNEIVVKKG

Nucleotide


Download         Length: 2103 bp        

>NTDB_id=1092844 ACK25W_RS06325 WP_414051821.1 1271324..1273426(-) (clpC) [Bacillus pumilus strain FJAT-56819]
ATGCGTTGTCAACATTGTCAAGTAAATGAAGCAACTATTCGCCTGAATATGCAAGTGAATTCGTCCCGGAGCCAAATGGT
TTTATGTGAAGACTGCTACACCTCTTTGATGGAGCAATCAAAAATGAAAATGGGACCTCAATTGTTCGGGGGAAGCTCAT
TCTTCTCTGAGCAAGCAGGACATGCACAAAGCGTAGAGCAGCCAAAGCAAAAAGGCTTACTCGATGAACTTGGCCGGAAT
TTAAAAGATGGCGCAAATGCTGGTTTAATTGATCCAGTCATCGGCCGTGATGAAGAAGTCGCAAGAGTCATTGAAATTTT
AAATAGAAGAAATAAAAATAACCCTGTTCTGATTGGTGAACCAGGTGTTGGGAAAACAGCGATCGCTGAAGGACTCGCAC
TGAAAATTGCAAGTGGCGATGTACCAAATAAATTAAAGAACAAACAAATCTATTTATTAGATGTCTCCTCCCTTGTAGCG
AATACAGGGATACGTGGTCAATTTGAGGAAAGAATGAAGCAGTTAATCAAAGAATTGCAAAGCCGTAAAAATATTATCTT
ATTTGTAGATGAAATCCATCTTCTTGTAGGCGCAGGATCTGCCGAAGGGTCAATGGATGCTGGAAACATCTTAAAACCAG
CCCTTGCACGAGGCGAGCTTCAGCTAGTAGGTGCGACGACATTAAAAGAATATCGTCAAATTGAAAAAGATGCCGCACTT
GAACGACGCTTCCAGCCCGTCATTGTGGATGAGCCAACACAAGATGAAGCGGTCGAGATTTTAAAAGGCATTCAAGATAA
GTACGAAAGTTATCATGGCGTCACTTATTCAGACGAAGCTATTCAAGCGTGTGTTCAATTATCTTCCCGGTATATTCAAG
ACCGTCATTTGCCGGATAAAGCCATTGATTTAATGGATGAAGCAGGTTCAAAAGCGAACCTCTCCATTGATGCAGCAAGT
GAAGATGAACTAACGAATCGTCTGACAGAAATTGCTGCTGAAAAACAAGCTGCTTTAAAAGAAGAACAATACGAAAAAGC
AGCGAAGCTTCGAGATGAAGAAGAAGCCATTGAAGCAAGACTTCAAAACAAAACAAATGACAAAGAACATGTCGTCACAG
CAGAAGCCATTCAAGCCATTGTGGAACAAAAAACAGGCATCCCTGTCGGCAAACTGCAAGCAGACGAACAAACCAAAATG
AAAGAAATGGACGTCCGCTTAAAAGCACGAGTGATCGGTCAGGAACATGCGGTTGAAAAAGTGGCGAAAGCTGTGAAAAG
AAGCAGAGCCGGCTTAAAATCGAAACATAGACCAACAGGCTCCTTCCTATTCGTTGGACCAACAGGTGTCGGGAAAACCG
AATTGTCAAAAACGCTAGCTGAAGAATTATTCGGTTCAAGAGATGCGATCATCCGTTTAGATATGAGTGAGTACATGGAG
AAACACTCAGTATCCAAGCTCATCGGTTCTCCTCCTGGTTATGTTGGACATGATGAAGCGGGTCAGCTGACGGAAAAAGT
GCGCAGAAAACCATACAGCATCATTTTGCTGGATGAAATCGAAAAAGCACATCCTGATGTGCAGCATATGTTCCTTCAAA
TCATGGAAGATGGCCGGTTAACAGACAGCCAAGGCAGAACCGTCAGCTTTAAAGATACGGTCATCATCATGACAAGTAAC
GCAGGCAGCACAGATAAAACGGTCAAAGTCGGCTTCCAGTCTGATCAGGAAGAAGCGATTGAGGAACAATCACTCATTGA
TTCACTCAGCGCCTATTTCAAGCCAGAATTCTTGAACCGTTTTGACAGCATCATTCAGTTTGACTCATTAGATAGAGATG
ATTTAGTGAAGATTGTGGATCTTCTGCTCAATGAGCTGTCAGAGCAATTAAAAGAGCAACATTTAACAGTCCATGTGTCA
AAAGAAGCGAAAGAAAAAATTGCAGAACTTGGATATCACCCTGCATTTGGTGCTCGTCCACTGCGAAGAACCATTCAAGA
GCATGTTGAAGATCAAATGACGGAAATATTGCTTGAAGAAGAAAAGCTTTCAGGATTTACTGTAGATGTTGAAGATAACG
AAATTGTAGTAAAAAAAGGATAA

Domains

Predicted by InterproScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(116-248)

AAA domain (Cdc48 subfamily) (AAA_2)

(437-604)

AAA lid domain (AAA_lid_9)

(253-353)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(610-685)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Lactococcus lactis subsp. cremoris KW2

56.098

100

0.591
  clpE Streptococcus mutans UA159

57.044

100

0.59
  clpE Streptococcus pneumoniae Rx1

55.11

100

0.57
  clpE Streptococcus pneumoniae D39

55.11

100

0.57
  clpE Streptococcus pneumoniae R6

55.11

100

0.57
  clpE Streptococcus pneumoniae TIGR4

55.11

100

0.57
  clpC Bacillus subtilis subsp. subtilis str. 168

53.134

95.714

0.509
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

46.759

92.571

0.433
  clpC Streptococcus thermophilus LMD-9

45.44

92.429

0.42
  clpC Streptococcus thermophilus LMG 18311

45.286

92.429

0.419
  clpC Streptococcus mutans UA159

43.712

93.143

0.407
  clpC Streptococcus pneumoniae TIGR4

44.904

89.714

0.403
  clpC Streptococcus pneumoniae Rx1

45.104

89

0.401
  clpC Streptococcus pneumoniae D39

45.104

89

0.401

Multiple sequence alignment