Detailed information
Bioinformatically predicted
Overview
| Name | abrB | Type | Regulator |
| Locus tag | ACK25W_RS00255 | Genome accession | NZ_CP179722 |
| Coordinates | 47053..47343 (-) | Length | 96 a.a. |
| NCBI ID | WP_087975202.1 | Uniprot ID | - |
| Organism | Bacillus pumilus strain FJAT-56819 | ||
| Function | repression of comK; repression of rok (predicted from homology) Competence regulation |
||
Genomic Context
Location: 42053..52343
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACK25W_RS00215 (ACK25W_00215) | - | 42088..42417 (+) | 330 | WP_024425625.1 | cyclic-di-AMP receptor | - |
| ACK25W_RS00220 (ACK25W_00220) | - | 42430..42870 (+) | 441 | WP_034665673.1 | YaaR family protein | - |
| ACK25W_RS00225 (ACK25W_00225) | holB | 42882..43871 (+) | 990 | WP_034665677.1 | DNA polymerase III subunit delta' | - |
| ACK25W_RS00230 (ACK25W_00230) | - | 43874..44701 (+) | 828 | WP_012008643.1 | stage 0 sporulation family protein | - |
| ACK25W_RS00235 (ACK25W_00235) | yabA | 44716..45069 (+) | 354 | WP_003217957.1 | DNA replication initiation control protein YabA | - |
| ACK25W_RS00240 (ACK25W_00240) | - | 45125..45868 (+) | 744 | WP_034665680.1 | tRNA1(Val) (adenine(37)-N6)-methyltransferase | - |
| ACK25W_RS00245 (ACK25W_00245) | - | 45855..46151 (+) | 297 | WP_106038598.1 | GIY-YIG nuclease family protein | - |
| ACK25W_RS00250 (ACK25W_00250) | rsmI | 46129..47007 (+) | 879 | WP_342689360.1 | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | - |
| ACK25W_RS00255 (ACK25W_00255) | abrB | 47053..47343 (-) | 291 | WP_087975202.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Regulator |
| ACK25W_RS00260 (ACK25W_00260) | metG | 47864..49861 (+) | 1998 | WP_342689875.1 | methionine--tRNA ligase | - |
| ACK25W_RS00265 (ACK25W_00265) | - | 49944..50711 (+) | 768 | WP_034665688.1 | TatD family hydrolase | - |
| ACK25W_RS00270 (ACK25W_00270) | - | 50956..52158 (+) | 1203 | WP_342689876.1 | ubiquitin-like domain-containing protein | - |
Sequence
Protein
Download Length: 96 a.a. Molecular weight: 10853.65 Da Isoelectric Point: 7.9655
>NTDB_id=1092823 ACK25W_RS00255 WP_087975202.1 47053..47343(-) (abrB) [Bacillus pumilus strain FJAT-56819]
MKMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSREG
AEQIINEIQNQLQSQK
MKMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSREG
AEQIINEIQNQLQSQK
Nucleotide
Download Length: 291 bp
>NTDB_id=1092823 ACK25W_RS00255 WP_087975202.1 47053..47343(-) (abrB) [Bacillus pumilus strain FJAT-56819]
ATGAAGATGAAATCTACAGGTATTGTACGTAAAGTTGACGAATTAGGGCGCGTGGTGATTCCAATCGAACTTCGCCGTAC
TCTAGGAATCGCTGAAAAAGACGCTTTGGAAATTTATGTTGATGATGAAAAAATTATCCTAAAAAAATATAAACCAAACA
TGACTTGCCAAGTTACAGGTGAAGTATCAGACGATAACCTTAAACTTGCTAATGGTAAATTAGTTCTTAGCCGTGAAGGT
GCAGAGCAAATCATTAACGAAATCCAAAACCAACTTCAATCACAAAAATAA
ATGAAGATGAAATCTACAGGTATTGTACGTAAAGTTGACGAATTAGGGCGCGTGGTGATTCCAATCGAACTTCGCCGTAC
TCTAGGAATCGCTGAAAAAGACGCTTTGGAAATTTATGTTGATGATGAAAAAATTATCCTAAAAAAATATAAACCAAACA
TGACTTGCCAAGTTACAGGTGAAGTATCAGACGATAACCTTAAACTTGCTAATGGTAAATTAGTTCTTAGCCGTGAAGGT
GCAGAGCAAATCATTAACGAAATCCAAAACCAACTTCAATCACAAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| abrB | Bacillus subtilis subsp. subtilis str. 168 |
93.75 |
100 |
0.938 |