Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   ACLUPT_RS27385 Genome accession   NZ_CP179718
Coordinates   5924960..5925358 (-) Length   132 a.a.
NCBI ID   WP_021012487.1    Uniprot ID   T1XFY8
Organism   Variovorax sp. SCN45     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 5919960..5930358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLUPT_RS27370 (ACLUPT_27370) - 5921693..5923999 (-) 2307 WP_237676104.1 methyl-accepting chemotaxis protein -
  ACLUPT_RS27375 (ACLUPT_27375) - 5924042..5924575 (-) 534 WP_237676105.1 chemotaxis protein CheW -
  ACLUPT_RS27380 (ACLUPT_27380) - 5924595..5924960 (-) 366 WP_237676106.1 response regulator -
  ACLUPT_RS27385 (ACLUPT_27385) pilG 5924960..5925358 (-) 399 WP_021012487.1 response regulator Regulator
  ACLUPT_RS27390 (ACLUPT_27390) - 5925443..5925613 (-) 171 WP_007838397.1 rubredoxin -
  ACLUPT_RS27395 (ACLUPT_27395) thiD 5925725..5926687 (+) 963 WP_237676107.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACLUPT_RS27400 (ACLUPT_27400) hemL 5926687..5927967 (+) 1281 WP_237676108.1 glutamate-1-semialdehyde 2,1-aminomutase -
  ACLUPT_RS27405 (ACLUPT_27405) - 5927971..5928486 (+) 516 WP_237676109.1 hypothetical protein -
  ACLUPT_RS27410 (ACLUPT_27410) purH 5928577..5930184 (-) 1608 WP_237676110.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14706.88 Da        Isoelectric Point: 7.3215

>NTDB_id=1092814 ACLUPT_RS27385 WP_021012487.1 5924960..5925358(-) (pilG) [Variovorax sp. SCN45]
MGPNGSGYKVLVIDDSNTIRRSAEIFLKQGGHEVLLAEDGFDALSKVNDHKPHLIFCDILMPRLDGYQTCAIIKRNAHFS
NVPVVMLSSKDGVFDKARGRMVGSQDYLTKPFTKDQLLQAVQQFGIVQQEVQ

Nucleotide


Download         Length: 399 bp        

>NTDB_id=1092814 ACLUPT_RS27385 WP_021012487.1 5924960..5925358(-) (pilG) [Variovorax sp. SCN45]
ATGGGCCCGAATGGATCTGGTTACAAGGTGCTCGTCATCGACGACAGCAACACCATCCGGCGCAGTGCCGAGATTTTTCT
GAAGCAGGGCGGGCACGAGGTTCTTCTGGCGGAAGACGGCTTCGATGCGCTCTCCAAGGTTAACGACCACAAGCCGCATC
TGATTTTCTGCGACATCCTGATGCCGCGGCTCGACGGCTATCAGACCTGCGCCATCATCAAGCGCAACGCTCATTTCTCC
AATGTCCCCGTCGTCATGCTGTCTTCGAAAGACGGTGTATTCGACAAGGCGCGCGGCCGCATGGTCGGCTCCCAGGACTA
CCTGACCAAGCCATTCACCAAAGACCAGCTGCTGCAGGCCGTGCAGCAGTTCGGCATCGTTCAACAGGAAGTGCAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB T1XFY8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

62.281

86.364

0.538

Multiple sequence alignment